AT3G28080.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 0.913 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : nodulin MtN21 /EamA-like transporter family protein | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
nodulin MtN21 /EamA-like transporter family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT3G28070.1); Has 2511 Blast hits to 2503 proteins in 449 species: Archae - 13; Bacteria - 1080; Metazoa - 6; Fungi - 0; Plants - 1195; Viruses - 0; Other Eukaryotes - 217 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:+:10451567..10455071 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 39244.10 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 10.05 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.77 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 358 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MAGAVSLWRR EAVFLTAMLA GETSIVGLST LFKVATSKGL NIYPFLSYSY LLASLLLLPS LFFTNRSRSL PPLSASILSK IGLLGFLGSM YVITGGIGIE 101: YSNPTLASAI GNIVPALTFI LAVIFRMEKV SFKERSSVAK VMGTILSLIG AFVVIFYHGP RVFVASSPPY LNFRQLSPPL SSSKSDWLIG GAILTIQGIF 201: VSVSFILQTH IMREYPEAFT VSILYILCIS IVTSMIGLVV EKNNPSIWII HFDITLFTIV TTGIITSVYY VIHSWAIRHK RPLYLAIFKP LSILIAVVMG 301: TIFLNDSLYL GCLIGGILIT LGFYVVMWGK ANEEKNKLLS FSGKEKTPLL LSGKNDQI |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)