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AT3G28070.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : nodulin MtN21 /EamA-like transporter family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
nodulin MtN21 /EamA-like transporter family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT3G28100.1); Has 2821 Blast hits to 2811 proteins in 454 species: Archae - 18; Bacteria - 1312; Metazoa - 7; Fungi - 2; Plants - 1197; Viruses - 0; Other Eukaryotes - 285 (source: NCBI BLink).
Protein Annotations
EMBL:AB028616EMBL:AK226700EMBL:AY065420EMBL:AY117250
EMBL:CP002686EnsemblPlants:AT3G28070EnsemblPlants:AT3G28070.1entrez:822431
GeneID:822431GO:GO:0005886GO:GO:0006810GO:GO:0016021
GO:GO:0022857GO:GO:0055085hmmpanther:PTHR31218hmmpanther:PTHR31218:SF64
HOGENOM:HOG000237441InParanoid:Q8VYZ7InterPro:IPR000620InterPro:IPR030184
iPTMnet:Q8VYZ7KEGG:ath:AT3G28070OMA:AHIMSEYPANTHER:PTHR31218
PaxDb:Q8VYZ7Pfam:PF00892Pfam:Q8VYZ7PhylomeDB:Q8VYZ7
PRO:PR:Q8VYZ7ProteinModelPortal:Q8VYZ7Proteomes:UP000006548RefSeq:NP_001030788.2
RefSeq:NP_189446.2RefSeq:NP_974370.1SUPFAM:0043518TAIR:AT3G28070
TMHMM:TMhelixUniGene:At.28490UniProt:Q8VYZ7
Coordinates (TAIR10) chr3:+:10447964..10450845
Molecular Weight (calculated) 39533.30 Da
IEP (calculated) 9.79
GRAVY (calculated) 0.76
Length 360 amino acids
Sequence (TAIR10)
(BLAST)
001: MPIMAGTASP WRREAVFLTA MLVVETSVVG ISTLFKFATS KGLNIYPFLG YSYLLASLLL LPSLFFTNRS SSLPPLSVSI LSKIGLLGFL GSMYVITGYI
101: GIEYSSPTLA SAINNITPAL TFILAIIFRM EKVSFKERSS LAKLMGTILS LIGALVVIFY HGPRVFLASS PPYVNFRQFS PPLSSSNSDW LIGGALLTMQ
201: GIFVSVSFIL QAHIMSVYPA AFRVSFLYTV CVSIVTSTIG LVVEKNNPSV WIIHFDITLI TIVTMAIVTS VYYVIHSWTV RHKGPLYLAI FKPLSILIAV
301: VMGAIFLNDS LYLGCLIGGI LITLGFYAVM WGKANEEKDQ LSFSEKEKTP LLLNRKNDQV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)