AT3G26720.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Glycosyl hydrolase family 38 protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Glycosyl hydrolase family 38 protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: mannose metabolic process, carbohydrate metabolic process; LOCATED IN: plasma membrane, vacuole, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Glycoside hydrolase/deacetylase, beta/alpha-barrel (InterPro:IPR011330), Glycoside hydrolase, family 38, central domain (InterPro:IPR015341), Glycoside hydrolase, family 38, core (InterPro:IPR000602), Glycosyl hydrolases 38, C-terminal (InterPro:IPR011682); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family 38 protein (TAIR:AT5G13980.2); Has 1103 Blast hits to 1053 proteins in 165 species: Archae - 7; Bacteria - 107; Metazoa - 691; Fungi - 10; Plants - 161; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:9816707..9823056 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 115226.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.70 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.34 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1019 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MAVKCFSLYL ILAAIVIGGV TSEYIEYNTK PRIVPEKINV HLVPHSHDDV GWLKTVDQYY VGSNNSIRGA CVQNVLDSVI ASLLDDENRK FIYVEMAFFQ 0101: RWWRQQSNAK KVKVKKLVDS GQLEFINGGM CMHDEATPHY IDMIDQTTLG HQFIKTEFGQ VPRVGWQIDP FGHSAVQAYL LGAEFGFDSL FFARIDYQDR 0201: AKRLREKTLE VIWQGSKSLG SSSQIFTGVF PRHYDPPEGF TFEINDVSAP IQDDPLLFDY NVQERVNDFV AAALAQVNVT RTNHIMWLMG TDFRYQYAYS 0301: WFRQIDKFIH YVNKDGRLNV LYSTPSIYTD AKYAANESWP LKTDDFFPYA DKPNAYWTGY FTSRPAFKKY VRDLSGYYLA ARQLEFLRGR DSSGPTTDML 0401: ADALAIAQHH DAVSGTQRQH VAADYALRLS MGYLQAEKLV ASSLSFLSAA KSSTEKKNPG TKFQQCPLLN ISYCPASEAR LLSGKSLVVV VYNSLGWKRE 0501: EVVRVPVSSE NVIVKDASGK EVVFQLLPLS EIALRIRNEY VKAYLGRSPR DTAKHVLAFT ASVPPLGFSS YVISDTGRTA RGLSASYVTS GSMNQNVEVG 0601: QGNLKLRYSE EGVKITRHLS TKNQVTAEQS YAYYIGSNGT DKDPQASGAY VFRPDGVLPI KSKEEAQLTI VQGPLFDEVH QELNSWISQI TRVYKGKNHA 0701: EIEFTIGPIP ADDGISKEII TKLTTTMKTN GTFYTDSNGR DFIKRIRDFR TDWDLQVYQP VAGNYYPLNL GIYMQDKTSE LSVLVDRAVG GSSLENGQIE 0801: LMLHRRMQHD DIRGVGEILN ETVCLPEGCK GLTIQGKFYV QIDKPGDGAK WRRTFGQEIY SPLLIAFTEQ EGDSWINSHK TTFSAFEPSY SLPKNVALLT 0901: LQELENGEVL LRLAHLFEVG EDSEYSVMAK VELKKLFHNK KIREVKETSL SGNQEKAEME KRRLIWKVEG SAGEEVKRGE AVDAEKLVVE LVPMEIRTLL 1001: IKFDDQIEMV GDKEQQHRL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)