AT5G13980.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Glycosyl hydrolase family 38 protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Glycosyl hydrolase family 38 protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: mannose metabolic process, carbohydrate metabolic process; LOCATED IN: apoplast, cell wall, plasma membrane, vacuole, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Glycoside hydrolase/deacetylase, beta/alpha-barrel (InterPro:IPR011330), Glycoside hydrolase, family 38, central domain (InterPro:IPR015341), Glycoside hydrolase, family 38, core (InterPro:IPR000602), Glycosyl hydrolases 38, C-terminal (InterPro:IPR011682); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family 38 protein (TAIR:AT3G26720.1); Has 1172 Blast hits to 1119 proteins in 194 species: Archae - 7; Bacteria - 147; Metazoa - 695; Fungi - 22; Plants - 164; Viruses - 0; Other Eukaryotes - 137 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:4508626..4514334 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 115908.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.41 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.35 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1024 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MDLAKFLCWI VLLLGISLVE SRYMVYNTSH TIVPGKLNVH VVPHSHDDVG WLKTVDQYYV GSNNSIQVAC VQNVLDSIVP ALLADKNRKF IYVEQAFFQR 0101: WWNEQSEEIK RIVKELIHSG QLELINGGMC MHDEAAPHYI DMIDQTTLGH RFIIREFNVT PRIGWQIDPF GHSAVQAYLL GAEVGFDSVF FGRIDYQDRE 0201: KRYKEKTLEV IWRGSKSLGS SSQIFAGAFP TNYEPPPGGF YYEITDDSPV VQDDPDLFDY NVQERVNAFV AAALDQANIT RINHIMFTMG TDFRYQYAHT 0301: WYRQMDKLIH YVNLDGRVNA FYSTPSIYTD AKHAANEAWP LKTEDYFPYA DRINAYWTGY FTSRPALKRY VRVMSAYYLA ARQLEFFKGR SQKGPNTDSL 0401: ADALAIAQHH DAVSGTSKQH VANDYAKRLA IGYVEAESVV ATSLAHLTKV DPTLNPTFQQ CLLLNISYCP SSEVNLSDGK SLIVLAYNPL GWKRVDIVRL 0501: PVVGGDVSVH DSEGHEVESQ LVPFTDEYVA LRKYHVEAYL GQSPTQVPKY WLVFSVTVPP LGFTTYTIST AKKTDGYSSK SYVSNILKGE QSIINIGHGH 0601: LKLSFSTDQG TAINYVNGRT SMTEPVKQTF SYYSAYNGSN DKEPLIPQNS GAYVFRPNGT FPINPEGQVP LTVIHGPLVD EVHQQINPWI SQITRVYKGK 0701: EHVEVEFIVG NIPIDDGIGK EVVTQISSSL KSNKTFYTDS SGRDYIKRIR DYRSDWKLDV NQPIAGNYYP INHGIYLQDS KKEFSVMVDR AFGGSSIVDG 0801: QVELMLHRRL LLDDSRGVAE NLNETVCVQD KCTGLTIQGK YYYRIDPYGE GAKWRRTFGQ EIYSPLLLAF AQQDDGKPMS FGAASFSGID PSYSLPDNVA 0901: LLTLQELDDG NVLLRLAHLY EVEEDKELSG VASVELKKLF PGKKIGKLTE MSLSANQERS TMEKKRLVWK VEGEGSYGEE KKAKRGREID PRKLEMELYP 1001: MEIRTVLIHL ELPSSHSRIN RFDA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)