AT3G25160.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 1.000 ASURE: endoplasmic reticulum What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ER lumen protein retaining receptor family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ER lumen protein retaining receptor family protein; FUNCTIONS IN: ER retention sequence binding, receptor activity; INVOLVED IN: protein retention in ER lumen, protein transport; LOCATED IN: integral to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: ER lumen protein retaining receptor (InterPro:IPR000133); BEST Arabidopsis thaliana protein match is: ER lumen protein retaining receptor family protein (TAIR:AT4G38790.1); Has 889 Blast hits to 889 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 314; Fungi - 182; Plants - 232; Viruses - 0; Other Eukaryotes - 161 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:9160337..9162023 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 31033.80 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.60 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.71 | ||||||||||||||||||||||||||||||||
| Length | 272 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGKRRGVSAV NVVFGWLRQQ SNKVKIALGI IISLILVVLL KFTVRNHNHF FIASELIHAA GILILIYKLT RQKTCSGLSL KSQEVTAIFL AVRLICSINM 101: EGDIHTVLDF ATLVSTLWVI YMIRYKLKAS YIKSLDTCYN YYVLVPSAIL ALIINPSTSY SYFHRILWAF CVYTESVSVL PQLRLMQNAQ IIEPFTAHYV 201: FALGIARFLA CAHWIIQVVE TRGHYLWLLG AGYFWFPVAL LAEIVQTFIL ADFCYYYVKS VMEGQLVLKM PV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)