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AT5G09550.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31871212 (2020): mitochondrion
  • PMID:30783145 (2019): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GDP dissociation inhibitor family protein / Rab GTPase activator family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GDP dissociation inhibitor family protein / Rab GTPase activator family protein; FUNCTIONS IN: RAB GDP-dissociation inhibitor activity; INVOLVED IN: regulation of GTPase activity, protein transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Rab GTPase activator (InterPro:IPR002005), GDP dissociation inhibitor (InterPro:IPR018203), Rab GDI protein (InterPro:IPR000806); BEST Arabidopsis thaliana protein match is: RAB GDP dissociation inhibitor 2 (TAIR:AT3G59920.1); Has 1326 Blast hits to 1219 proteins in 259 species: Archae - 2; Bacteria - 4; Metazoa - 658; Fungi - 290; Plants - 182; Viruses - 0; Other Eukaryotes - 190 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5044eggNOG:KOG1439EMBL:AL353994EMBL:CP002688
EnsemblPlants:AT5G09550EnsemblPlants:AT5G09550.1entrez:830814Gene3D:3.50.50.60
GeneID:830814Genevisible:Q9LXC0GO:GO:0005093GO:GO:0005096
GO:GO:0015031GO:GO:0016491GO:GO:0048046Gramene:AT5G09550.1
hmmpanther:PTHR11787hmmpanther:PTHR11787:SF10HOGENOM:HOG000163825InParanoid:Q9LXC0
InterPro:IPR000806InterPro:IPR018203InterPro:IPR023753iPTMnet:Q9LXC0
KEGG:ath:AT5G09550KO:K17255ncoils:CoilOMA:DPQKTTM
PaxDb:Q9LXC0Pfam:PF00996Pfam:Q9LXC0PhylomeDB:Q9LXC0
PIR:T49943PRIDE:Q9LXC0PRINTS:PR00891PRINTS:PR00892
PRO:PR:Q9LXC0ProteinModelPortal:Q9LXC0Proteomes:UP000006548Reactome:R-ATH-194840
RefSeq:NP_196517.3SMR:Q9LXC0STRING:3702.AT5G09550.1SUPFAM:SSF51905
SUPFAM:SSF54373TAIR:AT5G09550UniGene:At.32492UniProt:Q9LXC0
Coordinates (TAIR10) chr5:+:2963850..2966465
Molecular Weight (calculated) 49551.90 Da
IEP (calculated) 4.91
GRAVY (calculated) -0.27
Length 445 amino acids
Sequence (TAIR10)
(BLAST)
001: MDEEYDVIVL GTGLKECILS GLLSVDGLKV LHMDRNDYYG GESSSLNLTQ LWKRFRGSDT PEENLGASRE YNVDMIPKFI MANGLLVQTL IHTDVTKYLN
101: FKAVDGSFVY KKGKIYKVPA TDVEALKSPL MGLFEKRRAR KFFIYVQDYD EKDPKSHEGL DLSKVTAREI ISKYGLEDDT IDFIGHALAL HNDDDYLDQP
201: AIDFVKRIKL YAESLARFQG GSPYIYPLYG LGELPQAFAR LSAVYGGTYM LNKPECKVEF DGSGKAIGVT SAGETAKCKK VVCDPSYLSE KVKKVGKVTR
301: AVCIMSHPIP DTNDAHSVQI ILPQKQLGRK SDMYLFCCSY AHNVAPKGKY IAFVSAEAET DNPEEELKPG IELLGPTDEI FYHSYDTYVP TNIQEEDNCF
401: ISATYDATTH FESTVVDVLD MYTKITGKTL DLSVDLSAAS AAAEN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)