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AT5G40260.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.984
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Nodulin MtN3 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Nodulin MtN3 family protein; CONTAINS InterPro DOMAIN/s: MtN3/saliva-related transmembrane protein, conserved region (InterPro:IPR018169), RAG1-activating protein 1 homologue (InterPro:IPR018179), RAG1-activating protein-1-related (InterPro:IPR004316); BEST Arabidopsis thaliana protein match is: Nodulin MtN3 family protein (TAIR:AT4G10850.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:19275eggNOG:ENOG4111M4ReggNOG:KOG1623EMBL:AB010699
EMBL:AK118347EMBL:AY084840EMBL:BT005477EMBL:CP002688
EnsemblPlants:AT5G40260EnsemblPlants:AT5G40260.1entrez:834024GeneID:834024
Genevisible:Q8LFH5GO:GO:0005886GO:GO:0005887GO:GO:0008643
GO:GO:0010208GO:GO:0016021GO:GO:0034219GO:GO:0051119
GO:GO:0051260hmmpanther:PTHR10791hmmpanther:PTHR10791:SF41HOGENOM:HOG000237944
InParanoid:Q8LFH5IntAct:Q8LFH5InterPro:IPR004316KEGG:ath:AT5G40260
KO:K15382OMA:DVFNIAMPaxDb:Q8LFH5Pfam:PF03083
Pfam:Q8LFH5PhylomeDB:Q8LFH5PRIDE:Q8LFH5PRO:PR:Q8LFH5
ProteinModelPortal:Q8LFH5Proteomes:UP000006548RefSeq:NP_001031986.1RefSeq:NP_568579.1
SMR:Q8LFH5STRING:3702.AT5G40260.1TAIR:AT5G40260tair10-symbols:AtSWEET8
tair10-symbols:SWEET8TMHMM:TMhelixUniGene:At.30293UniGene:At.73195
UniProt:Q8LFH5
Coordinates (TAIR10) chr5:+:16089842..16091527
Molecular Weight (calculated) 26887.80 Da
IEP (calculated) 9.59
GRAVY (calculated) 0.76
Length 239 amino acids
Sequence (TAIR10)
(BLAST)
001: MVDAKQVRFI IGVIGNVISF GLFAAPAKTF WRIFKKKSVE EFSYVPYVAT VMNCMLWVFY GLPVVHKDSI LVSTINGVGL VIELFYVGVY LMYCGHKKNH
101: RRNILGFLAL EVILVVAIIL ITLFALKGDF VKQTFVGVIC DVFNIAMYGA PSLAIIKVVK TKSVEYMPFL LSLVCFVNAG IWTTYSLIFK IDYYVLASNG
201: IGTFLALSQL IVYFMYYKST PKEKTVKPSE VEISATERV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)