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AT1G61110.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NAC domain containing protein 25
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAC domain containing protein 25 (NAC025); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 2 (TAIR:AT3G15510.1); Has 3019 Blast hits to 3014 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3011; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJANeggNOG:ENOG4111FG3EMBL:AC002294EMBL:AK117878
EMBL:AY087839EMBL:BT008346EMBL:CP002684EnsemblPlants:AT1G61110
EnsemblPlants:AT1G61110.1entrez:842404GeneID:842404Genevisible:Q8GY42
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
Gramene:AT1G61110.1hmmpanther:PTHR31719hmmpanther:PTHR31719:SF9HOGENOM:HOG000237406
InParanoid:Q8GY42InterPro:IPR003441KEGG:ath:AT1G61110OMA:IFTCNSH
PaxDb:Q8GY42Pfam:PF02365Pfam:Q8GY42Pfscan:PS51005
PhylomeDB:Q8GY42PIR:H96636PRIDE:Q8GY42PRO:PR:Q8GY42
PROSITE:PS51005ProteinModelPortal:Q8GY42Proteomes:UP000006548RefSeq:NP_564771.1
SMR:Q8GY42STRING:3702.AT1G61110.1SUPFAM:SSF101941TAIR:AT1G61110
tair10-symbols:anac025tair10-symbols:NAC025UniGene:At.10430UniProt:Q8GY42
Coordinates (TAIR10) chr1:+:22516730..22518055
Molecular Weight (calculated) 36314.50 Da
IEP (calculated) 8.14
GRAVY (calculated) -0.68
Length 323 amino acids
Sequence (TAIR10)
(BLAST)
001: MENMGDSSIG PGHPHLPPGF RFHPTDEELV VHYLKKKADS VPLPVSIIAE IDLYKFDPWE LPSKASFGEH EWYFFSPRDR KYPNGVRPNR AATSGYWKAT
101: GTDKPIFTCN SHKVGVKKAL VFYGGKPPKG IKTDWIMHEY RLTDGNLSTA AKPPDLTTTR KNSLRLDDWV LCRIYKKNSS QRPTMERVLL REDLMEGMLS
201: KSSANSSSTS VLDNNDNNNN NNEEHFFDGM VVSSDKRSLC GQYRMGHEAS GSSSFGSFLS SKRFHHTGDL NNDNYNVSFV SMLSEIPQSS GFHANGVMDT
301: TSSLADHGVL RQAFQLPNMN WHS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)