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AT2G28680.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
vacuole 0.818
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RmlC-like cupins superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RmlC-like cupins superfamily protein; FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: petal, leaf whorl, sepal, male gametophyte, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), 11-S seed storage protein, plant (InterPro:IPR006044); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT1G07750.1); Has 908 Blast hits to 807 proteins in 103 species: Archae - 0; Bacteria - 2; Metazoa - 3; Fungi - 0; Plants - 902; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKJIeggNOG:ENOG410YDMXEMBL:AC007171EMBL:CP002685
EMBL:DQ056550EnsemblPlants:AT2G28680EnsemblPlants:AT2G28680.1entrez:817417
Gene3D:2.60.120.10GeneID:817417GO:GO:0045735Gramene:AT2G28680.1
hmmpanther:PTHR31189hmmpanther:PTHR31189:SF8HOGENOM:HOG000238701InterPro:IPR006044
InterPro:IPR006045InterPro:IPR011051InterPro:IPR014710KEGG:ath:AT2G28680
OMA:ETGMEWFPfam:PF00190PhylomeDB:Q9SIA7PIR:H84687
PRINTS:PR00439Proteomes:UP000006548RefSeq:NP_180436.1SMART:SM00835
SMR:Q9SIA7SUPFAM:SSF51182TAIR:AT2G28680UniGene:At.50107
UniProt:Q9SIA7
Coordinates (TAIR10) chr2:-:12303118..12304747
Molecular Weight (calculated) 38467.20 Da
IEP (calculated) 6.68
GRAVY (calculated) -0.00
Length 356 amino acids
Sequence (TAIR10)
(BLAST)
001: MELDLSPRLP KKVYGGDGGS YFAWCPEELP MLRDGNIGAS KLALEKYGLA LPRYSDSPKV AYVLQGAGTA GIVLPEKEEK VIAIKKGDSI ALPFGVVTWW
101: FNNEDTELVV LFLGETHKGH KAGQFTDFYL TGSNGIFTGF STEFVGRAWD LDETTVKKLV GSQTGNGIVK VDASLKMPEP KKGDRKGFVL NCLEAPLDVD
201: IKDGGRVVVL NTKNLPLVGE VGFGADLVRI DGHSMCSPGF SCDSALQVTY IVGGSGRVQI VGADGKRVLE THVKAGVLFI VPRFFVVSKI ADSDGLSWFS
301: IVTTPDPIFT HLAGRTSVWK ALSPEVLQAA FKVDPEVEKA FRSKRTSDAI FFSPSN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)