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AT3G24503.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31186290 (2019): cytosol None
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27122571 (2016): mitochondrion
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22215637 (2012): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : aldehyde dehydrogenase 2C4
Curator
Summary (TAIR10)
Arabidopsis thaliana aldehyde dehydrogenase AtALDH1a mRNA. a sinapaldehyde dehydrogenase catalyzes both the oxidation of coniferylaldehyde and sinapaldehyde forming ferulic acid and sinapic acid, respectively
Computational
Description (TAIR10)
aldehyde dehydrogenase 2C4 (ALDH2C4); FUNCTIONS IN: 3-chloroallyl aldehyde dehydrogenase activity, coniferyl-aldehyde dehydrogenase activity, aldehyde dehydrogenase (NAD) activity; INVOLVED IN: phenylpropanoid biosynthetic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldehyde/histidinol dehydrogenase (InterPro:IPR016161), Aldehyde dehydrogenase (InterPro:IPR015590), Aldehyde dehydrogenase, N-terminal (InterPro:IPR016162), Aldehyde dehydrogenase, conserved site (InterPro:IPR016160); BEST Arabidopsis thaliana protein match is: aldehyde dehydrogenase 2B4 (TAIR:AT3G48000.1); Has 62142 Blast hits to 61763 proteins in 3025 species: Archae - 475; Bacteria - 35763; Metazoa - 2632; Fungi - 2134; Plants - 1679; Viruses - 0; Other Eukaryotes - 19459 (source: NCBI BLink).
Protein Annotations
BioCyc:RETL1328306-WGS:GSTH-1757-MONOMERBioCyc:RETL1328306-WGS:GSTH-6623-MONOMERBioGrid:7373EC:1.2.1.3
eggNOG:COG1012eggNOG:KOG2450EMBL:AB020746EMBL:AF349448
EMBL:AK221230EMBL:AY056398EMBL:CP002686EnsemblPlants:AT3G24503
EnsemblPlants:AT3G24503.1entrez:822042Gene3D:3.40.309.10Gene3D:3.40.605.10
GeneID:822042Genevisible:Q56YU0GO:GO:0004029GO:GO:0005829
GO:GO:0009699GO:GO:0050269Gramene:AT3G24503.1gramene_pathway:1.2.1.68
gramene_pathway:PWY-5168hmmpanther:PTHR11699hmmpanther:PTHR11699:SF182HOGENOM:HOG000271505
InParanoid:Q56YU0IntAct:Q56YU0InterPro:IPR015590InterPro:IPR016160
InterPro:IPR016161InterPro:IPR016162InterPro:IPR016163InterPro:IPR029510
KEGG:ath:AT3G24503KO:K12355OMA:VIWINCYPaxDb:Q56YU0
Pfam:PF00171Pfam:Q56YU0PhylomeDB:Q56YU0PRIDE:Q56YU0
PRO:PR:Q56YU0PROSITE:PS00070PROSITE:PS00687ProteinModelPortal:Q56YU0
Proteomes:UP000006548Reactome:R-ATH-380612Reactome:R-ATH-5365859Reactome:R-ATH-71384
RefSeq:NP_566749.1scanprosite:PS00070scanprosite:PS00687SMR:Q56YU0
STRING:3702.AT3G24503.1SUPFAM:SSF53720TAIR:AT3G24503tair10-symbols:ALDH1A
tair10-symbols:ALDH2C4tair10-symbols:REF1UniGene:At.22894UniProt:Q56YU0
Coordinates (TAIR10) chr3:-:8919732..8923029
Molecular Weight (calculated) 54363.30 Da
IEP (calculated) 5.38
GRAVY (calculated) -0.08
Length 501 amino acids
Sequence (TAIR10)
(BLAST)
001: MENGKCNGAT TVKLPEIKFT KLFINGQFID AASGKTFETI DPRNGEVIAT IAEGDKEDVD LAVNAARYAF DHGPWPRMTG FERAKLINKF ADLIEENIEE
101: LAKLDAVDGG KLFQLGKYAD IPATAGHFRY NAGAADKIHG ETLKMTRQSL FGYTLKEPIG VVGNIIPWNF PSIMFATKVA PAMAAGCTMV VKPAEQTSLS
201: ALFYAHLSKE AGIPDGVLNI VTGFGSTAGA AIASHMDVDK VSFTGSTDVG RKIMQAAAAS NLKKVSLELG GKSPLLIFND ADIDKAADLA LLGCFYNKGE
301: ICVASSRVFV QEGIYDKVVE KLVEKAKDWT VGDPFDSTAR QGPQVDKRQF EKILSYIEHG KNEGATLLTG GKAIGDKGYF IQPTIFADVT EDMKIYQDEI
401: FGPVMSLMKF KTVEEGIKCA NNTKYGLAAG ILSQDIDLIN TVSRSIKAGI IWVNCYFGFD LDCPYGGYKM SGNCRESGMD ALDNYLQTKS VVMPLHNSPW
501: M
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)