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AT3G15820.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.694
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : phosphatidic acid phosphatase-related / PAP2-related
Curator
Summary (TAIR10)
Functions as phosphatidylcholine:diacylglycerol cholinephosphotransferase, a major reaction for the transfer of 18:1 into phosphatidylcholine for desaturation and also for the reverse transfer of 18:2 and 18:3 into the triacylglycerols synthesis pathway
Computational
Description (TAIR10)
REDUCED OLEATE DESATURATION 1 (ROD1); BEST Arabidopsis thaliana protein match is: phosphatidic acid phosphatase-related / PAP2-related (TAIR:AT3G15830.1); Has 58 Blast hits to 58 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G15820-MONOMERBioCyc:MetaCyc:AT3G15820-MONOMERBioGrid:6159EC:2.7.8.-
eggNOG:ENOG410IIW6eggNOG:ENOG410YGAWEMBL:AB017071EMBL:AF372876
EMBL:AY086160EMBL:BT004552EMBL:CP002686EnsemblPlants:AT3G15820
EnsemblPlants:AT3G15820.1entrez:820825GeneID:820825Genevisible:Q9LVZ7
GO:GO:0004142GO:GO:0006657GO:GO:0016021GO:GO:0046470
Gramene:AT3G15820.1hmmpanther:PTHR34674HOGENOM:HOG000030598InParanoid:Q9LVZ7
IntAct:Q9LVZ7KEGG:ath:AT3G15820OMA:VAAMMMFPaxDb:Q9LVZ7
Pfam:PF14378Pfam:Q9LVZ7PhylomeDB:Q9LVZ7PRIDE:Q9LVZ7
PRO:PR:Q9LVZ7ProteinModelPortal:Q9LVZ7Proteomes:UP000006548RefSeq:NP_566527.1
STRING:3702.AT3G15820.1TAIR:AT3G15820tair10-symbols:ROD1TMHMM:TMhelix
UniGene:At.5629UniProt:Q9LVZ7
Coordinates (TAIR10) chr3:+:5351217..5353573
Molecular Weight (calculated) 32978.90 Da
IEP (calculated) 9.59
GRAVY (calculated) 0.17
Length 301 amino acids
Sequence (TAIR10)
(BLAST)
001: MSAAAAETDV SLRRRSNSLN GNHTNGVAID GTLDNNNRRV GDTNTHMDIS AKKTDNGYAN GVGGGGWRSK ASFTTWTARD IVYVVRYHWI PCMFAAGLLF
101: FMGVEYTLQM IPARSEPFDL GFVVTRSLNR VLASSPDLNT VLAALNTVFV GMQTTYIVWT WLVEGRARAT IAALFMFTCR GILGYSTQLP LPQDFLGSGV
201: DFPVGNVSFF LFFSGHVAGS MIASLDMRRM QRLRLAMVFD ILNVLQSIRL LGTRGHYTID LAVGVGAGIL FDSLAGKYEE MMSKRHLGTG FSLISKDSLV
301: N
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)