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AT3G11720.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Polyketide cyclase/dehydrase and lipid transport superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Polyketide cyclase/dehydrase and lipid transport superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06440.3); Has 2540 Blast hits to 1555 proteins in 284 species: Archae - 0; Bacteria - 328; Metazoa - 676; Fungi - 254; Plants - 148; Viruses - 16; Other Eukaryotes - 1118 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IIBEeggNOG:ENOG41102WWEMBL:AC016795EMBL:AK228348
EMBL:BT006459EMBL:CP002686EnsemblPlants:AT3G11720EnsemblPlants:AT3G11720.1
EnsemblPlants:AT3G11720.2entrez:820344ExpressionAtlas:Q9SF25Gene3D:3.30.530.20
GeneID:820344Gramene:AT3G11720.1Gramene:AT3G11720.2hmmpanther:PTHR34560
hmmpanther:PTHR34560:SF1HOGENOM:HOG000243859InterPro:IPR023393KEGG:ath:AT3G11720
PhylomeDB:Q9SF25Proteomes:UP000006548RefSeq:NP_001030673.1RefSeq:NP_187778.1
SUPFAM:SSF55961TAIR:AT3G11720UniGene:At.39709UniProt:Q9SF25
Coordinates (TAIR10) chr3:-:3705991..3708310
Molecular Weight (calculated) 61483.70 Da
IEP (calculated) 4.62
GRAVY (calculated) -0.67
Length 542 amino acids
Sequence (TAIR10)
(BLAST)
001: MEKKRDVSEY RERLNETLSS PELINEQTLK TLVRKQLNEE CSVDILDQRV AALSSTIEKL RSVSTKDQDL SKSSTEASYG DWKVKHDDKD CRVMYREGLK
101: GSPFHTLLVE GCTDGTIEDC LCVCWESSFY EKWWPKLTFP SFRVLEAKCL QKFRIDEQIC LLRVKAPWPL TDREAVLQFF VFEYFKDDLV IILLNSIEVE
201: SGSVAEVNAV RIDFVGGVAI QKVTPEKSYI RFIAEVDIKL DLVPPSLINF MSRQLLGNGF KLFKKTIGSV AESDDYKTVL ADPLYTHIRE ALYSSDKTDE
301: ICQVNELHSQ QGRDCEEKEP KLEADDDMEK ENETRDCENE SVPCKRDVPE IEEEECVDDL KEENKSSPSS SSSSSSSSED EDKNGKTRFC ISPEVKQALG
401: TLERVISMVR KSKTDNNNTS TSSEEEEEEA SSSPMQHSGS TQIVSSSKVC IQDPNTELLD EASFAHYHNS NKIAPASPEI DLTTNSEVTR ITVSQATNLF
501: CQTTENSDDN YKPSGLNGGK SSNLQRKRKP SCFGFRFWRR RT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)