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AT3G44990.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.500
plasma membrane 0.500
ASURE: extracellular,plasma membrane
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : xyloglucan endo-transglycosylase-related 8
Curator
Summary (TAIR10)
xyloglucan endo-transglycosylase
Computational
Description (TAIR10)
xyloglucan endo-transglycosylase-related 8 (XTR8); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: cell wall biogenesis; LOCATED IN: apoplast, cell wall; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 32 (TAIR:AT2G36870.1); Has 1950 Blast hits to 1931 proteins in 270 species: Archae - 2; Bacteria - 210; Metazoa - 0; Fungi - 320; Plants - 1353; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G44990-MONOMERBioGrid:8954CAZy:GH16EC:2.4.1.207
EC:3.2.1.151eggNOG:ENOG410J8R0eggNOG:ENOG411167NEMBL:AL353992
EMBL:AY056163EMBL:AY136454EMBL:BT006326EMBL:CP002686
EMBL:X92975EnsemblPlants:AT3G44990EnsemblPlants:AT3G44990.1entrez:823634
Gene3D:2.60.120.200GeneID:823634Genevisible:P93046GO:GO:0005618
GO:GO:0005886GO:GO:0010411GO:GO:0016762GO:GO:0016998
GO:GO:0033946GO:GO:0042546GO:GO:0048046GO:GO:0071555
Gramene:AT3G44990.1hmmpanther:PTHR31062hmmpanther:PTHR31062:SF52HOGENOM:HOG000236368
InParanoid:P93046InterPro:IPR000757InterPro:IPR010713InterPro:IPR013320
InterPro:IPR016455KEGG:ath:AT3G44990KO:K08235OMA:FNQGFRN
PaxDb:P93046Pfam:P93046Pfam:PF00722Pfam:PF06955
Pfscan:PS51762PhylomeDB:P93046PIR:T48975PIRSF:PIRSF005604
PRIDE:P93046PRO:PR:P93046PROSITE:PS51762ProteinModelPortal:P93046
Proteomes:UP000006548RefSeq:NP_190085.1SMR:P93046STRING:3702.AT3G44990.1
SUPFAM:SSF49899TAIR:AT3G44990tair10-symbols:ATXTR8tair10-symbols:XTH31
tair10-symbols:XTR8UniGene:At.20372UniProt:P93046
Coordinates (TAIR10) chr3:-:16447280..16448678
Molecular Weight (calculated) 33542.40 Da
IEP (calculated) 9.06
GRAVY (calculated) -0.59
Length 293 amino acids
Sequence (TAIR10)
(BLAST)
001: MALSLIFLAL LVLCPSSGHS QRSPSPGYYP SSRVPTSPFD REFRTLWGSQ HQRREQDVVT LWLDKSTGSG FKSLRPYRSG YFGASIKLQP GFTAGVDTSL
101: YLSNNQEHPG DHDEVDIEFL GTTPGKPYSL QTNVFVRGSG DRNVIGREMK FTLWFDPTQD FHHYAILWNP NQIVFFVDDV PIRTYNRKNE AIFPTRPMWV
201: YGSIWDASDW ATENGRIKAD YRYQPFVAKY KNFKLAGCTA DSSSSCRPPS PAPMRNRGLS RQQMAALTWA QRNFLVYNYC HDPKRDHTQT PEC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)