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AT1G78060.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:19334764 (2009): plasma membrane
  • PMID:18431481 (2008): plastid
  • PMID:16356755 (2006): extracellular region
  • PMID:16287169 (2006): extracellular region
  • PMID:15593128 (2005): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Glycosyl hydrolase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Glycosyl hydrolase family protein; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: apoplast, cell wall, chloroplast, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family protein (TAIR:AT5G10560.1); Has 9183 Blast hits to 7917 proteins in 1177 species: Archae - 63; Bacteria - 5533; Metazoa - 16; Fungi - 1604; Plants - 525; Viruses - 0; Other Eukaryotes - 1442 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G78060-MONOMERCAZy:GH3EC:3.2.1.-eggNOG:COG1472
eggNOG:ENOG410IE0IEMBL:AC009243EMBL:AY064977EMBL:CP002684
EnsemblPlants:AT1G78060EnsemblPlants:AT1G78060.1entrez:844141Gene3D:3.20.20.300
Gene3D:3.40.50.1700GeneID:844141Genevisible:Q9SGZ5GO:GO:0004553
GO:GO:0005578GO:GO:0005618GO:GO:0005975GO:GO:0009505
GO:GO:0009506GO:GO:0009507GO:GO:0048046Gramene:AT1G78060.1
hmmpanther:PTHR30620hmmpanther:PTHR30620:SF8HOGENOM:HOG000031216InParanoid:Q9SGZ5
InterPro:IPR001764InterPro:IPR002772InterPro:IPR017853InterPro:IPR026891
InterPro:IPR026892KEGG:ath:AT1G78060OMA:NIHINQSPANTHER:PTHR30620
PaxDb:Q9SGZ5Pfam:PF00933Pfam:PF01915Pfam:PF14310
Pfam:Q9SGZ5PhylomeDB:Q9SGZ5PRIDE:Q9SGZ5PRO:PR:Q9SGZ5
ProteinModelPortal:Q9SGZ5Proteomes:UP000006548RefSeq:NP_177929.1SMART:SM01217
SMR:Q9SGZ5STRING:3702.AT1G78060.1SUPFAM:0046644SUPFAM:SSF51445
SUPFAM:SSF52279TAIR:AT1G78060UniGene:At.48387UniGene:At.71165
UniProt:Q9SGZ5
Coordinates (TAIR10) chr1:-:29349796..29352868
Molecular Weight (calculated) 83896.40 Da
IEP (calculated) 8.12
GRAVY (calculated) -0.19
Length 767 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKQLLLLLL LFIVHGVESA PPPHSCDPSN PTTKLYQFCR TDLPIGKRAR DLVSRLTIDE KISQLVNTAP GIPRLGVPAY EWWSEALHGV AYAGPGIRFN
101: GTVKAATSFP QVILTAASFD SYEWFRIAQV IGKEARGVYN AGQANGMTFW APNINIFRDP RWGRGQETPG EDPMMTGTYA VAYVRGLQGD SFDGRKTLSN
201: HLQASACCKH FTAYDLDRWK GITRYVFNAQ VSLADLAETY QPPFKKCIEE GRASGIMCAY NRVNGIPSCA DPNLLTRTAR GQWAFRGYIT SDCDAVSIIY
301: DAQGYAKSPE DAVADVLKAG MDVNCGSYLQ KHTKSALQQK KVSETDIDRA LLNLFSVRIR LGLFNGDPTK LPYGNISPNE VCSPAHQALA LDAARNGIVL
401: LKNNLKLLPF SKRSVSSLAV IGPNAHVVKT LLGNYAGPPC KTVTPLDALR SYVKNAVYHQ GCDSVACSNA AIDQAVAIAK NADHVVLIMG LDQTQEKEDF
501: DRVDLSLPGK QQELITSVAN AAKKPVVLVL ICGGPVDISF AANNNKIGSI IWAGYPGEAG GIAISEIIFG DHNPGGRLPV TWYPQSFVNI QMTDMRMRSA
601: TGYPGRTYKF YKGPKVYEFG HGLSYSAYSY RFKTLAETNL YLNQSKAQTN SDSVRYTLVS EMGKEGCDVA KTKVTVEVEN QGEMAGKHPV LMFARHERGG
701: EDGKRAEKQL VGFKSIVLSN GEKAEMEFEI GLCEHLSRAN EFGVMVLEEG KYFLTVGDSE LPLIVNV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)