AT1G78060.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:extracellular 1.000 ASURE: extracellular What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Glycosyl hydrolase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Glycosyl hydrolase family protein; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: apoplast, cell wall, chloroplast, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family protein (TAIR:AT5G10560.1); Has 9183 Blast hits to 7917 proteins in 1177 species: Archae - 63; Bacteria - 5533; Metazoa - 16; Fungi - 1604; Plants - 525; Viruses - 0; Other Eukaryotes - 1442 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:-:29349796..29352868 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 83896.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.12 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.19 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 767 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MAKQLLLLLL LFIVHGVESA PPPHSCDPSN PTTKLYQFCR TDLPIGKRAR DLVSRLTIDE KISQLVNTAP GIPRLGVPAY EWWSEALHGV AYAGPGIRFN 101: GTVKAATSFP QVILTAASFD SYEWFRIAQV IGKEARGVYN AGQANGMTFW APNINIFRDP RWGRGQETPG EDPMMTGTYA VAYVRGLQGD SFDGRKTLSN 201: HLQASACCKH FTAYDLDRWK GITRYVFNAQ VSLADLAETY QPPFKKCIEE GRASGIMCAY NRVNGIPSCA DPNLLTRTAR GQWAFRGYIT SDCDAVSIIY 301: DAQGYAKSPE DAVADVLKAG MDVNCGSYLQ KHTKSALQQK KVSETDIDRA LLNLFSVRIR LGLFNGDPTK LPYGNISPNE VCSPAHQALA LDAARNGIVL 401: LKNNLKLLPF SKRSVSSLAV IGPNAHVVKT LLGNYAGPPC KTVTPLDALR SYVKNAVYHQ GCDSVACSNA AIDQAVAIAK NADHVVLIMG LDQTQEKEDF 501: DRVDLSLPGK QQELITSVAN AAKKPVVLVL ICGGPVDISF AANNNKIGSI IWAGYPGEAG GIAISEIIFG DHNPGGRLPV TWYPQSFVNI QMTDMRMRSA 601: TGYPGRTYKF YKGPKVYEFG HGLSYSAYSY RFKTLAETNL YLNQSKAQTN SDSVRYTLVS EMGKEGCDVA KTKVTVEVEN QGEMAGKHPV LMFARHERGG 701: EDGKRAEKQL VGFKSIVLSN GEKAEMEFEI GLCEHLSRAN EFGVMVLEEG KYFLTVGDSE LPLIVNV |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)