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AT4G30810.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:15539469 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : serine carboxypeptidase-like 29
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
serine carboxypeptidase-like 29 (scpl29); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 26 (TAIR:AT2G35780.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G30810-MONOMEREC:3.4.16.-eggNOG:COG2939eggNOG:KOG1282
EMBL:AL022198EMBL:AL161577EMBL:AY050958EMBL:AY133774
EMBL:CP002687EnsemblPlants:AT4G30810EnsemblPlants:AT4G30810.1entrez:829204
ESTHER:arath-SCP29Gene3D:3.40.50.1820GeneID:829204Genevisible:Q949Q7
GO:GO:0004185GO:GO:0005576GO:GO:0005773GO:GO:0051603
Gramene:AT4G30810.1hmmpanther:PTHR11802hmmpanther:PTHR11802:SF32HOGENOM:HOG000198295
InParanoid:Q949Q7InterPro:IPR001563InterPro:IPR018202InterPro:IPR029058
InterPro:IPR033124KEGG:ath:AT4G30810KO:K16297MEROPS:S10.A32
OMA:WGDCERSPANTHER:PTHR11802PaxDb:Q949Q7Pfam:PF00450
Pfam:Q949Q7PhylomeDB:Q949Q7PIR:F85360PRIDE:Q949Q7
PRINTS:PR00724PRO:PR:Q949Q7PROSITE:PS00131PROSITE:PS00560
ProteinModelPortal:Q949Q7Proteomes:UP000006548RefSeq:NP_567854.1scanprosite:PS00131
scanprosite:PS00560SMR:Q949Q7STRING:3702.AT4G30810.1SUPFAM:SSF53474
SwissPalm:Q949Q7TAIR:AT4G30810tair10-symbols:scpl29UniGene:At.25408
UniProt:Q949Q7
Coordinates (TAIR10) chr4:+:15003474..15006017
Molecular Weight (calculated) 53058.60 Da
IEP (calculated) 6.27
GRAVY (calculated) -0.21
Length 479 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKTRGSCCL VNALIAIAFL ATAHLCEAGL SQKEQDKVSK LPGQNFNVSF AHYSGFVATN EQLGRALFYW LFEAVEDAKS KPLVLWLNGG PGCSSVAYGE
101: AEEIGPFHIK ADGKTLYLNQ YSWNQAANIL FLDAPVGVGY SYSNTSSDLK SNGDKRTAED SLKFLLKWVE RFPEYKGRDF YIVGESYAGH YIPQLSEAIV
201: KHNQGSDKNS INLKGYMVGN GLMDDFHDRL GLFQYIWSLG FISDQTYSLL QLQCGFESFI HSSKQCNKIL EIADKEIGNI DQYSVFTPAC VANASQSNML
301: LKKRPMTSRV SEQYDPCTEK HTTVYFNLPE VQKALHVPPG LAPSKWDTCS DVVSEHWNDS PSSVLNIYHE LIAAGLRIWV FSGDADAVVP VTSTRYSIDA
401: LNLRPLSAYG PWYLDGQVGG WSQQYAGLNF VTVRGAGHEV PLHRPKQALA LFKAFISGTP LSTHENSISR DMSELVSDS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)