AT1G05320.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 1.000 What is SUBAcon? |
|||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||
| Computational Description (TAIR10) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: fruit, egg cell; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32240.1); Has 267650 Blast hits to 119772 proteins in 3899 species: Archae - 3706; Bacteria - 62589; Metazoa - 106546; Fungi - 19914; Plants - 13918; Viruses - 1287; Other Eukaryotes - 59690 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:1554856..1557658 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 89456.20 Da | ||||||||||||||||||||||||
| IEP (calculated) | 4.61 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.82 | ||||||||||||||||||||||||
| Length | 790 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEEATKVSSD VPQAKEVTKE DTVMEKEEED TIFDGGFVKV EKEGINKKYD DDDDEKAEKQ LKSLEDALQL HDVKHKELTE VKEAFDGLGL ELENSRKKMI 101: ELEDRIRISA LEAEKLEELQ KQSASELEEK LKISDERYSK TDALLSQALS QNSVLEQKLK SLEELSEKVS ELKSALIVAE EEGKKSSIQM QEYQEKVSKL 201: ESSLNQSSAR NSELEEDLRI ALQKGAEHED IGNVSTKRSV ELQGLFQTSQ LKLEKAEEKL KDLEAIQVKN SSLEATLSVA MEKERDLSEN LNAVMEKLKS 301: SEERLEKQAR EIDEATTRSI ELEALHKHSE LKVQKTMEDF SSRDTEAKSL TEKSKDLEEK IRVYEGKLAE ACGQSLSLQE ELDQSSAENE LLADTNNQLK 401: IKIQELEGYL DSEKETAIEK LNQKDTEAKD LITKLKSHEN VIEEHKRQVL EASGVADTRK VEVEEALLKL NTLESTIEEL EKENGDLAEV NIKLNQKLAN 501: QGSETDDFQA KLSVLEAEKY QQAKELQITI EDLTKQLTSE RERLRSQISS LEEEKNQVNE IYQSTKNELV KLQAQLQVDK SKSDDMVSQI EKLSALVAEK 601: SVLESKFEQV EIHLKEEVEK VAELTSKLQE HKHKASDRDV LEEKAIQLHK ELQASHTAIS EQKEALSHKH SELEATLKKS QEELDAKKSV IVHLESKLNE 701: LEQKVKLADA KSKETESTGK EEEVEVKSRD SDLSFSNPKQ TKIKKNLDAA SSSGHVMIQK AETWHLMTLK IALGVALVSV ILGIIVGKNY |
||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)