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AT3G11600.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.805
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06270.1); Has 171 Blast hits to 171 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J3D2eggNOG:ENOG4111EE3EMBL:AC009918EMBL:AK117497
EMBL:AY085790EMBL:BT005174EMBL:CP002686EnsemblPlants:AT3G11600
EnsemblPlants:AT3G11600.1entrez:820333GeneID:820333GO:GO:0080167
Gramene:AT3G11600.1hmmpanther:PTHR33177HOGENOM:HOG000239136KEGG:ath:AT3G11600
OMA:FFREDRIPhylomeDB:Q9SRN4Proteomes:UP000006548RefSeq:NP_566393.1
TAIR:AT3G11600UniGene:At.39722UniProt:Q9SRN4
Coordinates (TAIR10) chr3:+:3667337..3667690
Molecular Weight (calculated) 13040.60 Da
IEP (calculated) 9.49
GRAVY (calculated) -0.66
Length 117 amino acids
Sequence (TAIR10)
(BLAST)
001: MSRRNKNGPK LELRLNLSPP PSQASQMSLV RSPNRSNTTS PSSCVSSETN QEENETITSM VLVGCPRCLM YVMLSDDDPK CPKCKSTVLL DFLQENAFAA
101: TTATAANTRR KKKTWWN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)