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AT3G05520.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Subunits of heterodimeric actin filament capping protein Capz superfamily
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Subunits of heterodimeric actin filament capping protein Capz superfamily; FUNCTIONS IN: actin binding; INVOLVED IN: actin cytoskeleton organization; LOCATED IN: nucleus, F-actin capping protein complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: F-actin capping protein, alpha subunit, actin binding (InterPro:IPR018315), F-actin capping protein, alpha subunit (InterPro:IPR002189), F-actin capping protein, alpha subunit, conserved site (InterPro:IPR017865); Has 649 Blast hits to 643 proteins in 214 species: Archae - 0; Bacteria - 0; Metazoa - 391; Fungi - 148; Plants - 37; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410ZAWXeggNOG:KOG0836EMBL:AK118090EnsemblPlants:AT3G05520
EnsemblPlants:AT3G05520.1entrez:819717ExpressionAtlas:Q541X2GeneID:819717
GO:GO:0008290GO:GO:0051016Gramene:AT3G05520.1hmmpanther:PTHR10653
hmmpanther:PTHR10653:SF0InParanoid:O82631InterPro:IPR002189InterPro:IPR017865
PANTHER:PTHR10653PaxDb:Q541X2Pfam:O82631Pfam:PF01267
PhylomeDB:Q541X2PRIDE:Q541X2PRINTS:PR00191PROSITE:PS00748
PROSITE:PS00749ProteinModelPortal:Q541X2RefSeq:NP_187203.1scanprosite:PS00748
scanprosite:PS00749SMR:Q541X2STRING:3702.AT3G05520.2SUPFAM:SSF90096
TAIR:AT3G05520UniGene:At.8UniProt:O82631UniProt:Q541X2
Coordinates (TAIR10) chr3:+:1598611..1601134
Molecular Weight (calculated) 35040.10 Da
IEP (calculated) 4.31
GRAVY (calculated) -0.42
Length 308 amino acids
Sequence (TAIR10)
(BLAST)
001: MADEEDELLE TELSYDQKKE IAKWFFLNAP AGEINYVAKD LKAVLSDEEV YNEAAMEAFP VYNKTHMICL EMPSGAGDVI VSSYSEINEN EYLDPRTAQV
101: AIVDHVKQIC TKVRPANDEE LPSLYIEEYR YALDAEIQRY VSESYPKGMS AVNCVKGKDN EGPGSDFELV VIITAMRLSP QNFCNGSWRS VWNIDFQDES
201: QVLDIKGKLQ VGAHYFEEGN VELDAKKDFQ DSTIFQSADD CAIAIANIIR HHETEYLASL EVAYSKLPDN TFKDLRRKLP VTRTLFPWQN TLQFSLTREV
301: EKELGLGK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)