AT3G03500.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.382 plasma membrane 0.369 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : TatD related DNase | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
TatD related DNase; FUNCTIONS IN: endodeoxyribonuclease activity, producing 5'-phosphomonoesters, deoxyribonuclease activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Deoxyribonuclease, TatD Mg-dependent (InterPro:IPR012278), Deoxyribonuclease, TatD (InterPro:IPR015992), Deoxyribonuclease, TatD-related, conserved site (InterPro:IPR018228), Deoxyribonuclease, TatD-related (InterPro:IPR001130); BEST Arabidopsis thaliana protein match is: TatD related DNase (TAIR:AT5G17570.1); Has 10176 Blast hits to 10176 proteins in 2674 species: Archae - 185; Bacteria - 6995; Metazoa - 308; Fungi - 266; Plants - 100; Viruses - 0; Other Eukaryotes - 2322 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:832929..834350 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 29979.90 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.02 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.09 | ||||||||||||||||||||||||||||||||
| Length | 272 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKLFDAHCHL QDKRVIDKAS QLISAALAVG VTNFAVNGTS EKDWNLVKEM GETYPSVVPC FGLHPWFIAD RSPHWFKTLK KFFETTPTAA VGEIGLDKGP 101: LAGGIDYSDQ LVVFRPQLEL AKELNKPVAV HCIDAFDDLL EIMRSIGPFP AGVILHSFNG SAEVVPKLAE LGAYFSFSGW FTYIDEKIAK KTLKSIPSDR 201: LLLETDSPDG LPKSDESSSD PKPTLNEPAN ILAVLDYVAN LSNMKKEELA ELSYVNSVRL FSYPGSKLLT DQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)