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AT2G44580.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : zinc ion binding
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
zinc ion binding; CONTAINS InterPro DOMAIN/s: Sister chromatid cohesion protein DCC1 (InterPro:IPR019128); Has 214 Blast hits to 211 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 115; Fungi - 49; Plants - 36; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41108M8eggNOG:KOG0798EMBL:CP002685EnsemblPlants:AT2G44580
EnsemblPlants:AT2G44580.1entrez:819066GeneID:819066Gramene:AT2G44580.1
hmmpanther:PTHR13395hmmpanther:PTHR13395:SF6InParanoid:F4IU60InterPro:IPR019128
KEGG:ath:AT2G44580KO:K11271ncoils:CoilOMA:CTKSKTY
PaxDb:F4IU60Pfam:PF09724PRIDE:F4IU60Proteomes:UP000006548
RefSeq:NP_181986.2STRING:3702.AT2G44580.1TAIR:AT2G44580UniGene:At.71271
UniProt:F4IU60
Coordinates (TAIR10) chr2:-:18402081..18403412
Molecular Weight (calculated) 44061.70 Da
IEP (calculated) 4.63
GRAVY (calculated) -0.30
Length 386 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEIGGAEAV INLKSGYSLP ISYHPCFGPH EDLLLLEADD KLVSDIFHQR VTLRGLPDED AVLCTKSKTY AIKFVGNSNS MFLIPPSIFP GDAQVSDTNN
101: NVSVLKIAPG NMELVEASPR LDKLKQILLA NPFGAGEVEA MMDVDNDDLD HSGKKDLALY TWSDLVNTVQ ASDEELRNGL QSLSAIEIDG FWRVIDENYL
201: DVILRMLLHN CVLKDWSFDD LDEDEVVNAL VADEFPSQLA SHCLRVFGSK VNETDKWKLE PRLVCLHFAR QILREEKMRL ESFMEEWKKK IPDGMEERFE
301: MLEGEVLTEK IGIETRVYTF SVRSLPSTPE ERFSVLFKHR SKWEWKDLEP YLRDLHVPRL SMEGLLLKYT RRAQPKADAP PVFSAR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)