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AT2G39805.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.719
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Integral membrane Yip1 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Integral membrane Yip1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Yip1 domain (InterPro:IPR006977); BEST Arabidopsis thaliana protein match is: Integral membrane Yip1 family protein (TAIR:AT5G27490.1); Has 450 Blast hits to 449 proteins in 164 species: Archae - 0; Bacteria - 0; Metazoa - 179; Fungi - 104; Plants - 92; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4110TJReggNOG:KOG3114EMBL:AY080826EMBL:BT000979
EMBL:CP002685EnsemblPlants:AT2G39805EnsemblPlants:AT2G39805.1entrez:818567
ExpressionAtlas:Q8RXL0GeneID:818567GO:GO:0016021Gramene:AT2G39805.1
hmmpanther:PTHR12822hmmpanther:PTHR12822:SF5HOGENOM:HOG000006074InterPro:IPR006977
Pfam:PF04893PhylomeDB:Q8RXL0Proteomes:UP000006548RefSeq:NP_850322.1
STRING:3702.AT2G39805.2TAIR:AT2G39805TMHMM:TMhelixUniGene:At.44018
UniProt:Q8RXL0
Coordinates (TAIR10) chr2:-:16610216..16612353
Molecular Weight (calculated) 30710.00 Da
IEP (calculated) 4.71
GRAVY (calculated) 0.35
Length 275 amino acids
Sequence (TAIR10)
(BLAST)
001: MDESFANLQS SHLLGSVPAV ISDDKRSTNV PIASVNEGPS ASMQIFPPNL GNNTKGYQTL ESPTEGPAQQ PSNNWKGFFN VYSYTQYFDV DTDVVLNRLM
101: SSLYPTSGDF FNKIDANPDL YGLVWICTTL VFVLASLGNC ATYLVKKRTD SNAPWIFDVN YMNLAASIIY GYAIIVPLGF YFALRYMGSK ADLLRFWCLW
201: GYSLFIFVPT SLPLLIPVEF LRWVIILLAG SASSCFVALN LRSYLETNND ITVVMAAAFG LQMVLSIFIK VWFFP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)