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AT2G38810.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31023727 (2019): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30961429 (2019): nucleus
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:24124904 (2013): plastid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22550958 (2012): plastid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:15496452 (2005): nucleus
FP Images

7-day old Arabidopsis seedling (no marker)

RFP-At2g38810
(full-length)
overlay

SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : histone H2A 8
Curator
Summary (TAIR10)
Encodes HTA8, a histone H2A protein.
Computational
Description (TAIR10)
histone H2A 8 (HTA8); FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of flower development; LOCATED IN: nucleolus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2A (InterPro:IPR002119), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: histone H2A 11 (TAIR:AT3G54560.1); Has 3864 Blast hits to 3859 proteins in 325 species: Archae - 0; Bacteria - 0; Metazoa - 2527; Fungi - 294; Plants - 612; Viruses - 2; Other Eukaryotes - 429 (source: NCBI BLink).
Protein Annotations
BioGrid:3805eggNOG:COG5262eggNOG:KOG1757EMBL:AC007133
EMBL:AK220868EMBL:AY088573EMBL:CP002685EnsemblPlants:AT2G38810
EnsemblPlants:AT2G38810.1EnsemblPlants:AT2G38810.2EnsemblPlants:AT2G38810.3entrez:818463
ExpressionAtlas:Q9SII0Gene3D:1.10.20.10GeneID:818463Genevisible:Q9SII0
GO:GO:0000786GO:GO:0000790GO:GO:0003677GO:GO:0005730
GO:GO:0006342GO:GO:0010468GO:GO:0044030Gramene:AT2G38810.1
Gramene:AT2G38810.2Gramene:AT2G38810.3hmmpanther:PTHR23430hmmpanther:PTHR23430:SF76
HOGENOM:HOG000234652InParanoid:Q9SII0IntAct:Q9SII0InterPro:IPR002119
InterPro:IPR007125InterPro:IPR009072InterPro:IPR032454KEGG:ath:AT2G38810
KO:K11251OMA:ATIAGGXPaxDb:Q9SII0Pfam:PF00125
Pfam:PF16211Pfam:Q9SII0PhylomeDB:Q9SII0PIR:F84809
PRIDE:Q9SII0PRINTS:PR00620PRO:PR:Q9SII0ProteinModelPortal:Q9SII0
Proteomes:UP000006548RefSeq:NP_181415.1RefSeq:NP_850298.1RefSeq:NP_850299.1
SMART:SM00414SMR:Q9SII0STRING:3702.AT2G38810.1SUPFAM:SSF47113
TAIR:AT2G38810tair10-symbols:HTA8UniGene:At.37243UniProt:Q0WRN0
UniProt:Q9SII0
Coordinates (TAIR10) chr2:-:16219444..16220679
Molecular Weight (calculated) 14370.60 Da
IEP (calculated) 11.20
GRAVY (calculated) -0.20
Length 136 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGKGGKGLL AAKTTAAAAN KDSVKKKSIS RSSRAGIQFP VGRIHRQLKQ RVSAHGRVGA TAAVYTASIL EYLTAEVLEL AGNASKDLKV KRITPRHLQL
101: AIRGDEELDT LIKGTIAGGG VIPHIHKSLV NKVTKD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)