AT2G35140.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DCD (Development and Cell Death) domain protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
DCD (Development and Cell Death) domain protein; CONTAINS InterPro DOMAIN/s: Development/cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089); BEST Arabidopsis thaliana protein match is: DCD (Development and Cell Death) domain protein (TAIR:AT5G61910.2); Has 307 Blast hits to 293 proteins in 25 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 297; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:14813990..14816808 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 98917.70 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.99 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.89 | ||||||||||||||||||||||||||||||||
| Length | 879 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPKNRRMMEE FNGASSGGEP EYGAIFMSNN STRKECLSRK LFGLPIGLGG FVKHVKAGMM LFLFEFEKRE LHGVFQACSD GAINIEPNAF RSSGKQFPAQ 101: VKFTEKWRCR PLCESEFGNA IHENYFTPTK FNFGLSKAQV QRLLKLFSMK KVERSRLRET AAPKPLRKSE NTVGDRGFRN RCAGEMDEDV DREFPFRVTP 201: SGDHRGRRLT ENYGFGEESD SGLEYDPTKG NEYSRLVDPK LHGLKDRLRC KVTMNNNFGT DASTKNSYNS LVNDRKVPKN LRHAANGWLE SEYHEKDGIA 301: QASLWSNNKE RLNFESDPVV PAQSSVPPDL PYETNTGYYD PDHPSIMGDA TMTSSRHGLG APNVDLTGSA SFTANSNYGF GEDIIPFGDY VSDALPSERF 401: QPFPDEHNGT SMNTSSLGSG GFYIPMPIEH WNGHLRHSQF LGPLTSAGGT ENMREFERPM YSDRNIFPSF VYPSSSRGLS TKDGLNNELQ TYQHPEEFGD 501: HVSYTTDMVV RGPSIHPSFT NPSTSGDGAD LYPENRANNE VQAYQPHKEF GGDAFDSNNR VTHRVSPAKL ERNRTRPSVF NRLGGRLKQL DAERDTSPDT 601: ESVDEVMAFL NDCHKDWMEQ KRANMSNSED VAIPKKKKEK IHTAEVLDND LMLTFTETTP DDLLDCEGSM EHSVQKLPFI DFKRRSRAQR SLGNPTQGCK 701: DNPEHSASPN KKRKLLRPKL VEDDSEKDRE NKAGPIKIVL ASEKDRGNND LTVKVLASQS PTKVHVHDFL GRNEGDSQMD RGRNDNPIET VLASQSATEV 801: PVHDFLGRNE CDSQKDDNPV ENLLASQSAT EVHVRDFFGR NEDDSEKNKG NNNDPAENFL ALEYASEVPF HDFLGRDER |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)