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AT2G33550.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.995
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Homeodomain-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors (TAIR:AT4G31270.1); Has 743 Blast hits to 735 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 25; Fungi - 8; Plants - 568; Viruses - 0; Other Eukaryotes - 142 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IIRNeggNOG:ENOG410YBJKEMBL:AC002332EMBL:AY065364
EMBL:AY096389EMBL:CP002685EMBL:HQ322383EnsemblPlants:AT2G33550
EnsemblPlants:AT2G33550.1entrez:817920Gene3D:1.10.10.60GeneID:817920
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0006355GO:GO:0006952GO:GO:0042803GO:GO:0045892
GO:GO:0050777GO:GO:0071219hmmpanther:PTHR21654hmmpanther:PTHR21654:SF10
HOGENOM:HOG000240766InParanoid:Q8VZ20IntAct:Q8VZ20InterPro:IPR009057
InterPro:IPR017877iPTMnet:Q8VZ20KEGG:ath:AT2G33550ncoils:Coil
OMA:ETESYWVPaxDb:Q8VZ20Pfam:PF13837Pfscan:PS50090
PhylomeDB:Q8VZ20PIR:H84746PRIDE:Q8VZ20PRO:PR:Q8VZ20
PROSITE:PS50090ProteinModelPortal:Q8VZ20Proteomes:UP000006548RefSeq:NP_850213.1
SMR:Q8VZ20STRING:3702.AT2G33550.1TAIR:AT2G33550UniGene:At.28516
UniProt:Q8VZ20
Coordinates (TAIR10) chr2:-:14210180..14211487
Molecular Weight (calculated) 34863.20 Da
IEP (calculated) 6.04
GRAVY (calculated) -0.79
Length 314 amino acids
Sequence (TAIR10)
(BLAST)
001: MALEQLGLGV SAVDGGENSS APSNDGGDDG VKTARLPRWT RQEILVLIQG KRVAENRVRR GRAAGMALGS GQMEPKWASV SSYCKRHGVN RGPVQCRKRW
101: SNLAGDYKKI KEWESQIKEE TESYWVMRND VRREKKLPGF FDKEVYDIVD GGVIPPAVPV LSLGLAPASD EGLLSDLDRR ESPEKLNSTP VAKSVTDVID
201: KEKQEACVAD QGRVKEKQPE AANVEGGSTS QEERKRKRTS FGEKEEEEEE GETKKMQNQL IEILERNGQL LAAQLEVQNL NLKLDREQRK DHGDSLVAVL
301: NKLADAVAKI ADKM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)