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AT2G28630.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 3-ketoacyl-CoA synthase 12
Curator
Summary (TAIR10)
Encodes KCS12, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).
Computational
Description (TAIR10)
3-ketoacyl-CoA synthase 12 (KCS12); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity; INVOLVED IN: response to osmotic stress; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), Very-long-chain 3-ketoacyl-CoA synthase (InterPro:IPR012392), 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (InterPro:IPR013747), FAE1/Type III polyketide synthase-like protein (InterPro:IPR013601), Thiolase-like, subgroup (InterPro:IPR016038); BEST Arabidopsis thaliana protein match is: 3-ketoacyl-CoA synthase 3 (TAIR:AT1G07720.1); Has 2195 Blast hits to 2173 proteins in 528 species: Archae - 0; Bacteria - 1011; Metazoa - 0; Fungi - 4; Plants - 1037; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G28630-MONOMEREC:2.3.1.199eggNOG:ENOG410IH8SeggNOG:ENOG410Y9JS
EMBL:AC007171EMBL:AY056170EMBL:AY084716EMBL:AY091195
EMBL:CP002685EnsemblPlants:AT2G28630EnsemblPlants:AT2G28630.1entrez:817412
Gene3D:3.40.47.10GeneID:817412Genevisible:Q9SIB2GO:GO:0005783
GO:GO:0006633GO:GO:0016020GO:GO:0016747Gramene:AT2G28630.1
hmmpanther:PTHR31561hmmpanther:PTHR31561:SF24HOGENOM:HOG000238893InParanoid:Q9SIB2
InterPro:IPR012392InterPro:IPR013601InterPro:IPR013747InterPro:IPR016039
KEGG:00061+2.3.1.180KEGG:00062+2.3.1.199KEGG:ath:AT2G28630KO:K15397
OMA:RHRRHAKPANTHER:PTHR31561PaxDb:Q9SIB2Pfam:PF08392
Pfam:PF08541Pfam:Q9SIB2PhylomeDB:Q9SIB2PIR:C84687
PIRSF:PIRSF036417PRIDE:Q9SIB2PRO:PR:Q9SIB2ProteinModelPortal:Q9SIB2
Proteomes:UP000006548RefSeq:NP_180431.1STRING:3702.AT2G28630.1SUPFAM:SSF53901
TAIR:AT2G28630tair10-symbols:KCS12UniGene:At.26366UniPathway:UPA00094
UniProt:Q9SIB2
Coordinates (TAIR10) chr2:-:12275719..12277149
Molecular Weight (calculated) 53976.70 Da
IEP (calculated) 9.03
GRAVY (calculated) -0.18
Length 476 amino acids
Sequence (TAIR10)
(BLAST)
001: MDLLFLFFSL LLSYLFFKIW KLIDSKQDKD CYILDYQCHK PTDDRMVSTQ FSGEIIYRNQ NLGLTEYKFL LKAIVSSGIG EQTYAPRLVF EGREERPSLQ
101: DGISEMEEFY VDSIGKLLER NQISPKDIDI LVVNVSMLSS TPSLASRIIN HYKMRDDVKV FNLTGMGCSA SLISVDIVKN IFKSYANKLA LVATSESLSP
201: NWYSGNNRSM ILANCLFRSG GCAILLTNKR SLRKKAMFKL KCMVRTHHGA REESYNCCIQ AEDEQGRVGF YLGKNLPKAA TRAFVENLKV ITPKILPVTE
301: LIRFMLKLLI KKIKIRQNPS KGSTNLPPGT PLKAGINFKT GIEHFCIHTG GKAVIDGIGH SLDLNEYDIE PARMTLHRFG NTSASSLWYV LAYMEAKKRL
401: KRGDRVFMIS FGAGFKCNSC VWEVVRDLTG GESKGNVWNH CIDDYPPKSI LNPYLEKFGW IQDEDPDTFK VPDAFM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)