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AT2G26490.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.883
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transducin/WD40 repeat-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781), G-protein beta WD-40 repeat, region (InterPro:IPR020472); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT4G34380.1); Has 38085 Blast hits to 18995 proteins in 635 species: Archae - 34; Bacteria - 5266; Metazoa - 14476; Fungi - 8827; Plants - 4594; Viruses - 0; Other Eukaryotes - 4888 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2319eggNOG:ENOG410ISJ0EMBL:AC002505EMBL:BT015086
EMBL:BT015900EMBL:CP002685EnsemblPlants:AT2G26490EnsemblPlants:AT2G26490.1
entrez:817190Gene3D:2.130.10.10GeneID:817190Gramene:AT2G26490.1
hmmpanther:PTHR22844hmmpanther:PTHR22844:SF145HOGENOM:HOG000236376InterPro:IPR001680
InterPro:IPR015943InterPro:IPR017986InterPro:IPR020472KEGG:ath:AT2G26490
ncoils:CoilOMA:KASIWIKPfam:PF00400Pfscan:PS50082
Pfscan:PS50294PhylomeDB:O48716PIR:T00982PRINTS:PR00320
PROSITE:PS50082PROSITE:PS50294Proteomes:UP000006548RefSeq:NP_180217.1
SMART:SM00320SMR:O48716STRING:3702.AT2G26490.1SUPFAM:SSF50978
TAIR:AT2G26490UniGene:At.50101UniProt:O48716
Coordinates (TAIR10) chr2:+:11268035..11269432
Molecular Weight (calculated) 51440.00 Da
IEP (calculated) 8.98
GRAVY (calculated) -0.41
Length 465 amino acids
Sequence (TAIR10)
(BLAST)
001: MFTEADSIPR AKYANMMHSD PNLSSTMTQQ TEEEYGIRNS SASAVGTGMY DRMSCEGSPM MMSPWNQATP FTQTQWSTVE ENLPQNGLIG SLVREEGHIY
101: SLAATKDLLY TGSDSKNIRV WKNLKEFSAF KCNSGLVKAI VISGEKIFTG HQDGKIRVWK VSPKNQSLHK RSGTLPTLKD IFKASLKPRN YVEVKKHRTA
201: LWIKHADAVS CLSLNDEQGL LYSASWDRTI KVWRIADSKC LESIPAHDDA VNSVVSTTEA IVFSGSADGT VKAWKRDQQG KYTKHTLMQT LTKQESAVTA
301: LAVSKNGAAV YFGSSDGLVN FWEREKQLNY GGILKGHKLA VLCLEVAGSL VFSGSADKTI CVWKRDGNIH TCLSVLTGHT GPVKCLAVEA DREASERRDK
401: KWIVYSGSLD KSVKVWGVSE SFIDMNQMSM MQQQQQQHVI SHSEPFMSDG SFSSSAGGAS SHRRH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)