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AT2G23680.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.837
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Cold acclimation protein WCOR413 family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cold acclimation protein WCOR413 family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to stress; LOCATED IN: membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, LP.10 ten leaves visible, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Cold acclimation WCOR413 (InterPro:IPR008892); BEST Arabidopsis thaliana protein match is: Cold acclimation protein WCOR413 family (TAIR:AT4G37220.1); Has 150 Blast hits to 147 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 150; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:2251EMBL:AC003040EMBL:AC004482EMBL:AV824982
EMBL:CP002685EnsemblPlants:AT2G23680EnsemblPlants:AT2G23680.1entrez:816899
GeneID:816899Genevisible:O64834GO:GO:0005886GO:GO:0016020
GO:GO:0016021hmmpanther:PTHR33596hmmpanther:PTHR33596:SF1HOGENOM:HOG000239742
InterPro:IPR008892KEGG:ath:AT2G23680OMA:HTKACGGPaxDb:O64834
Pfam:O64834Pfam:PF05562PhylomeDB:O64834PIR:T02423
PRO:PR:O64834Proteomes:UP000006548RefSeq:NP_001118373.1RefSeq:NP_179948.1
STRING:3702.AT2G23680.1TAIR:AT2G23680TMHMM:TMhelixUniGene:At.27155
UniProt:O64834
Coordinates (TAIR10) chr2:+:10066242..10067164
Molecular Weight (calculated) 21369.70 Da
IEP (calculated) 8.77
GRAVY (calculated) 0.71
Length 189 amino acids
Sequence (TAIR10)
(BLAST)
001: MENIEYLNEI QAVAGKLIHS YGVPVMITLF LRWLASIVAV FLMILDQTKW KYSNNIMASL LAPYLFSSLP IVIFQVLRNG VGKWIALLTV ILRLFLPNHF
101: HESLEIPGAT ILLIVVTPSD IGAIFRDDLR YTGGDVCLLT SFYLINKHTK ACGGIKNSFT QKDKVTYSIC LWILFVYPIL SSFAALFYL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)