suba logo
AT2G20770.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
cytosol 0.947
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GCR2-like 2
Curator
Summary (TAIR10)
Encodes a protein with reported similarity to GCR2 a putative G protein coupled receptor thought to be an ABA receptor.GCL2 also has similarity to LANCL1 and LANCL2, human homologs of bacterial lanthionine synthetase.
Computational
Description (TAIR10)
GCR2-like 2 (GCL2); FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: extrinsic to membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: LanC-like protein, eukaryotic (InterPro:IPR020464), Six-hairpin glycosidase-like (InterPro:IPR008928), Lanthionine synthetase C-like (InterPro:IPR007822); BEST Arabidopsis thaliana protein match is: G protein coupled receptor (TAIR:AT1G52920.1); Has 689 Blast hits to 684 proteins in 212 species: Archae - 0; Bacteria - 201; Metazoa - 271; Fungi - 68; Plants - 112; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQIAeggNOG:KOG2787EMBL:AC006234EMBL:AY063934
EMBL:AY096480EMBL:CP002685EnsemblPlants:AT2G20770EnsemblPlants:AT2G20770.1
entrez:816606GeneID:816606Genevisible:Q8VZQ6GO:GO:0019898
GO:GO:0046872Gramene:AT2G20770.1hmmpanther:PTHR12736hmmpanther:PTHR12736:SF13
HOGENOM:HOG000240926InParanoid:Q8VZQ6InterPro:IPR007822InterPro:IPR020464
KEGG:ath:AT2G20770OMA:NDLSLCSPaxDb:Q8VZQ6Pfam:PF05147
Pfam:Q8VZQ6PhylomeDB:Q8VZQ6PIR:B84593PRIDE:Q8VZQ6
PRINTS:PR01950PRINTS:PR01951PRO:PR:Q8VZQ6ProteinModelPortal:Q8VZQ6
Proteomes:UP000006548RefSeq:NP_850003.1SMART:SM01260SMR:Q8VZQ6
STRING:3702.AT2G20770.1SUPFAM:0053930TAIR:AT2G20770tair10-symbols:GCL2
UniGene:At.27138UniGene:At.71164UniProt:Q8VZQ6
Coordinates (TAIR10) chr2:+:8945380..8947041
Molecular Weight (calculated) 44492.50 Da
IEP (calculated) 6.27
GRAVY (calculated) -0.03
Length 405 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGRFFDNVM PDFVKEKESV SGGDTLRNLL AMPYSSLSQQ LKRSALDLKE TVVIETWGFS GQTVEDFTLY SGTLGAAFLL FRAYQVTGNA NDLSLCLEIV
101: KACDTASASS GDVTFLCGRA GVCGLGAVAA KLSGEEDLLN YYLGQFRLIR LSSDLPNELL YGRVGYLWAC LFINKYIGKE TLSSDTIREV AQEIIKEGRS
201: MAKKGSSPLM FEWYGKRYWG AAHGLAGIMH VLMDVQLKPD EAEDVKGTLK YMIKNRFPSG NYPASEEDKK KDILVHWCHG APGIALTLGK AAEVFGEREF
301: LEASAAAAEV VWNRGLLKRV GICHGISGNA YVFLALYRAT GRSEYLYRAK AFASFLLDRG PKLLSKGEMH GGDSPYSLFE GVAGMAYLFL DMVDPSEARF
401: PGYEL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)