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AT2G20750.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : expansin B1
Curator
Summary (TAIR10)
member of BETA-EXPANSINS. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)
Computational
Description (TAIR10)
expansin B1 (EXPB1); INVOLVED IN: plant-type cell wall organization, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Major pollen allergen Lol pI (InterPro:IPR005795), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin B3 (TAIR:AT4G28250.1); Has 2076 Blast hits to 2069 proteins in 143 species: Archae - 0; Bacteria - 15; Metazoa - 0; Fungi - 9; Plants - 2024; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JX34eggNOG:ENOG41104C8EMBL:AC006234EMBL:AY084478
EMBL:BT003932EMBL:BT005024EMBL:CP002685EMBL:U95967
EnsemblPlants:AT2G20750EnsemblPlants:AT2G20750.1entrez:816604Gene3D:2.40.40.10
Gene3D:2.60.40.760GeneID:816604Genevisible:Q9SKU2GO:GO:0005576
GO:GO:0005618GO:GO:0006949GO:GO:0009506GO:GO:0016020
GO:GO:0019953GO:GO:0071555Gramene:AT2G20750.1hmmpanther:PTHR31692
hmmpanther:PTHR31692:SF5HOGENOM:HOG000220794InParanoid:Q9SKU2InterPro:IPR005795
InterPro:IPR007112InterPro:IPR007117InterPro:IPR007118InterPro:IPR009009
KEGG:ath:AT2G20750OMA:QAGSKEWPaxDb:Q9SKU2Pfam:PF01357
Pfam:PF03330Pfam:Q9SKU2Pfscan:PS50842Pfscan:PS50843
PhylomeDB:Q9SKU2PIR:H84592PIR:T50657PRIDE:Q9SKU2
PRINTS:PR00829PRINTS:PR01225PRO:PR:Q9SKU2PROSITE:PS50842
PROSITE:PS50843ProteinModelPortal:Q9SKU2Proteomes:UP000006548RefSeq:NP_179668.1
SMART:SM00837SMR:Q9SKU2STRING:3702.AT2G20750.1SUPFAM:SSF49590
SUPFAM:SSF50685TAIR:AT2G20750tair10-symbols:ATEXPB1tair10-symbols:ATHEXP BETA 1.5
tair10-symbols:EXPB1UniGene:At.10326UniGene:At.24324UniProt:Q9SKU2
Coordinates (TAIR10) chr2:+:8941185..8942430
Molecular Weight (calculated) 29110.10 Da
IEP (calculated) 9.57
GRAVY (calculated) -0.03
Length 271 amino acids
Sequence (TAIR10)
(BLAST)
001: MQLFPVILPT LCVFLHLLIS GSGSTPPLTH SNQQVAATRW LPATATWYGS AEGDGSSGGA CGYGSLVDVK PFKARVGAVS PILFKGGEGC GACYKVRCLD
101: KTICSKRAVT IIATDQSPSG PSAKAKHTHF DLSGAAFGHM AIPGHNGVIR NRGLLNILYR RTACKYRGKN IAFHVNAGST DYWLSLLIEY EDGEGDIGSM
201: HIRQAGSKEW ISMKHIWGAN WCIVEGPLKG PFSVKLTTLS NNKTLSATDV IPSNWVPKAT YTSRLNFSPV L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)