AT5G07770.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.898 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Actin-binding FH2 protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Actin-binding FH2 protein; FUNCTIONS IN: actin binding; INVOLVED IN: cellular component organization, actin cytoskeleton organization; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Actin-binding FH2/DRF autoregulatory (InterPro:IPR003104), Actin-binding FH2 (InterPro:IPR015425); BEST Arabidopsis thaliana protein match is: actin binding (TAIR:AT5G07740.1); Has 32498 Blast hits to 13926 proteins in 764 species: Archae - 52; Bacteria - 3235; Metazoa - 13136; Fungi - 3419; Plants - 6778; Viruses - 1558; Other Eukaryotes - 4320 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:2474816..2479022 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 79239.60 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.51 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.37 | ||||||||||||||||||||||||||||||||||||
| Length | 722 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSPVEITGAD AVVTPPMRGR VPLPPPPPPP MRRSAPSPPP MSGRVPPPPP PPPMFDPKGA GRVICCLRPG QNKSSLKRFQ CGKLTNAWEE LQRHGEAQTA 101: PEFDLSEIEA LFSAAVQNQA DKSGSRREAF EANPDKLQLI SGADALVPLP PPPPPMPRRS PPPPPPRFDA FDHKGARMVC GFRCPVTKRS SLKPLHWVKI 201: TRALQGSLWD ELQIQYGESQ TAIELDVPEI ETLFSVGAKP RPKPKPEKVP LIDLKRANNT IVNLKILKMP LPDMMAAVMA MDESVLDVDQ IENLIQLCPT 301: KEEMELLKNY TGDKATLGKS EQCLLELMKV PRFEAKLRVL SFKIPFGTKI TKFRKMLNVV NSACEEVRSS QMLKEIMKII LFLGNTLNQG TARGSAVGFR 401: LDSLLILSET RADNNKMTLM HYLCKVLASK AADLLDFHKD LQSLESTLEI NLKSLAEEIH AITKGLEKLK QELTASETDG PVSQVFRKLL KDFISSAETQ 501: VATVSTLYSS ARINADALAH YFGEDPNHYP FEKVSATLLS FIRLFKKAHQ ENVKQEDLEK KKAATEDVFG GPDHNIDSDT SLDDSEAKSP SRIRPPPSIP 601: RPPSRPRYAC CRIPAVNPPP RLVCGPYPLP RLVRVGSPSP PPPSMSGGAP PPPPPPPMLV ASRTAPPPHL SHVRSIPFQT RLVMGTSPLP LLVREGAPPP 701: TLPSMSGGAP PPPPPLPMLR YQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)