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AT2G18540.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.996
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RmlC-like cupins superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RmlC-like cupins superfamily protein; FUNCTIONS IN: nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT4G36700.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IG7KEMBL:AC006135EMBL:CP002685EnsemblPlants:AT2G18540
EnsemblPlants:AT2G18540.1entrez:816369Gene3D:2.60.120.10GeneID:816369
GO:GO:0045735Gramene:AT2G18540.1hmmpanther:PTHR31189hmmpanther:PTHR31189:SF7
InParanoid:F4IQK5InterPro:IPR006045InterPro:IPR011051InterPro:IPR014710
KEGG:ath:AT2G18540ncoils:CoilOMA:HADMVFYPaxDb:F4IQK5
Pfam:PF00190PIR:E84565PRIDE:F4IQK5ProMEX:F4IQK5
ProteinModelPortal:F4IQK5Proteomes:UP000006548RefSeq:NP_179444.2SMART:SM00835
SMR:F4IQK5STRING:3702.AT2G18540.1SUPFAM:SSF51182TAIR:AT2G18540
UniGene:At.52809UniProt:F4IQK5
Coordinates (TAIR10) chr2:-:8042382..8045008
Molecular Weight (calculated) 84774.00 Da
IEP (calculated) 5.98
GRAVY (calculated) -1.26
Length 707 amino acids
Sequence (TAIR10)
(BLAST)
001: MSRFRILPLS IFLCFVSLFF CTESFTHQNG VVPSFDPSYS SPLLVKKDQR TSVVATEFGN ISAVQIGDGY HIQFITLEPN ALLLPLLLHS DMVFFVHTGT
101: GILNWIDEES ERKLELRRGD VFRLRSGTVF YVHSNEKLRV YAIFNVGKCL NDPCLGAYSS VRDLLLGFDD RTLRSAFAVP EDILRKIRDA TKPPLIVNAL
201: PRNRTQGLEE DKWQSRLVRL FVSVEDVTDH LAMKPIVDTN KKKSRTFNVF EEDPDFENNN GRSIVVDEKD LDALKGSRFG VFMVNLTKGS MIGPHWNPSA
301: CEISIVLEGE GMVRVVNQQS LSSCKNDRKS ESFMVEEGDV FVVPKFHPMA QMSFENSSFV FMGFSTSAKT NHPQFLVGQS SVLKVLDRDV VAVSFNLSNE
401: TIKGLLKAQK ESVIFECASC AEGELSKLMR EIEERKRREE EEIERRRKEE EEARKREEAK RREEEEAKRR EEEETERKKR EEEEARKREE ERKREEEEAK
501: RREEERKKRE EEAEQARKRE EEREKEEEMA KKREEERQRK EREEVERKRR EEQERKRREE EARKREEERK REEEMAKRRE QERQRKEREE VERKIREEQE
601: RKREEEMAKR REQERQKKER EEMERKKREE EARKREEEMA KIREEERQRK EREDVERKRR EEEAMRREEE RKREEEAAKR AEEERRKKEE EEEKRRWPPQ
701: PKPPEEI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)