suba logo
AT2G15980.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
mitochondrion 0.886
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G39710.1); Has 28218 Blast hits to 10356 proteins in 245 species: Archae - 1; Bacteria - 15; Metazoa - 229; Fungi - 251; Plants - 27094; Viruses - 0; Other Eukaryotes - 628 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC006438EMBL:CP002685
EnsemblPlants:AT2G15980EnsemblPlants:AT2G15980.1entrez:816093GeneID:816093
Gramene:AT2G15980.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF499HOGENOM:HOG000090540
InParanoid:Q9XIM8InterPro:IPR002885KEGG:ath:AT2G15980OMA:HRSKSRW
PaxDb:Q9XIM8Pfam:PF01535Pfam:PF13041Pfam:Q9XIM8
Pfscan:PS51375PhylomeDB:Q9XIM8PIR:D84535PRIDE:Q9XIM8
PRO:PR:Q9XIM8PROSITE:PS51375ProteinModelPortal:Q9XIM8Proteomes:UP000006548
RefSeq:NP_179197.1SMR:Q9XIM8STRING:3702.AT2G15980.1TAIR:AT2G15980
TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.66206UniProt:Q9XIM8
Coordinates (TAIR10) chr2:-:6951349..6952845
Molecular Weight (calculated) 56125.70 Da
IEP (calculated) 6.89
GRAVY (calculated) -0.22
Length 498 amino acids
Sequence (TAIR10)
(BLAST)
001: MSTSILRRIL DPTRKPKPDA ILSISLLTTV SSPPSPPSDP LISDAVSILT HHRSKSRWST LRSLQPSGFT PSQFSEITLC LRNNPHLSLR FFLFTRRYSL
101: CSHDTHSCST LIHILSRSRL KSHASEIIRL ALRLAATDED EDRVLKVFRS LIKSYNRCGS APFVFDLLIK SCLDSKEIDG AVMVMRKLRS RGINAQISTC
201: NALITEVSRR RGASNGYKMY REVFGLDDVS VDEAKKMIGK IKPNATTFNS MMVSFYREGE TEMVERIWRE MEEEVGCSPN VYSYNVLMEA YCARGLMSEA
301: EKVWEEMKVR GVVYDIVAYN TMIGGLCSNF EVVKAKELFR DMGLKGIECT CLTYEHLVNG YCKAGDVDSG LVVYREMKRK GFEADGLTIE ALVEGLCDDR
401: DGQRVVEAAD IVKDAVREAM FYPSRNCYEL LVKRLCEDGK MDRALNIQAE MVGKGFKPSQ ETYRAFIDGY GIVGDEETSA LLAIEMAESL KLRAEEES
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)