AT1G66345.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G01110.1); Has 32626 Blast hits to 11011 proteins in 270 species: Archae - 3; Bacteria - 29; Metazoa - 476; Fungi - 329; Plants - 30874; Viruses - 0; Other Eukaryotes - 915 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:24737719..24739353 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 62335.80 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.76 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.09 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 544 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASALRRLVE QQQWRYLVSQ STRSPKLIHG FFSFSSKTNP NPNKQQQILI DYISKSLQSN DTWETLSTKF SSIDLSDSLI ETILLRFKNP ETAKQALSFF 101: HWSSHTRNLR HGIKSYALTI HILVKARLLI DARALIESSL LNSPPDSDLV DSLLDTYEIS SSTPLVFDLL VQCYAKIRYL ELGFDVFKRL CDCGFTLSVI 201: TLNTLIHYSS KSKIDDLVWR IYECAIDKRI YPNEITIRIM IQVLCKEGRL KEVVDLLDRI CGKRCLPSVI VNTSLVFRVL EEMRIEESMS LLKRLLMKNM 301: VVDTIGYSIV VYAKAKEGDL VSARKVFDEM LQRGFSANSF VYTVFVRVCC EKGDVKEAER LLSEMEESGV SPYDETFNCL IGGFARFGWE EKGLEYCEVM 401: VTRGLMPSCS AFNEMVKSVS KIENVNRANE ILTKSIDKGF VPDEHTYSHL IRGFIEGNDI DQALKLFYEM EYRKMSPGFE VFRSLIVGLC TCGKVEAGEK 501: YLKIMKKRLI EPNADIYDAL IKAFQKIGDK TNADRVYNEM ISVR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)