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AT2G03810.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.994
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 18S pre-ribosomal assembly protein gar2-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
18S pre-ribosomal assembly protein gar2-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: cotyledon; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13650.1); Has 7945 Blast hits to 4358 proteins in 575 species: Archae - 23; Bacteria - 2851; Metazoa - 1872; Fungi - 665; Plants - 238; Viruses - 54; Other Eukaryotes - 2242 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J49MeggNOG:ENOG410Y52IEMBL:CP002685EnsemblPlants:AT2G03810
EnsemblPlants:AT2G03810.1EnsemblPlants:AT2G03810.2EnsemblPlants:AT2G03810.3EnsemblPlants:AT2G03810.4
entrez:814907GeneID:814907GO:GO:0005886Gramene:AT2G03810.1
Gramene:AT2G03810.2Gramene:AT2G03810.3Gramene:AT2G03810.4hmmpanther:PTHR33914
hmmpanther:PTHR33914:SF2KEGG:ath:AT2G03810OMA:ISGHITYProteomes:UP000006548
RefSeq:NP_001030966.1RefSeq:NP_001118260.1RefSeq:NP_178475.2RefSeq:NP_973412.1
TAIR:AT2G03810UniGene:At.41371UniGene:At.72572UniProt:F4ITB8
Coordinates (TAIR10) chr2:+:1162703..1164286
Molecular Weight (calculated) 49068.20 Da
IEP (calculated) 4.26
GRAVY (calculated) -1.05
Length 439 amino acids
Sequence (TAIR10)
(BLAST)
001: MRADNDHALG NSIEICKDES KPHQCLDENW EDAELKVPEN GKNNNNVCEL FYDTRSGEEW ENEAGKKVRD TSHDCDANVD SPEKKDPVFY MDKNVTACDL
101: PEIVVCYKEN TYHIVKDICV DEGVPVQEKF LFGEKDSVKS SSTEDLMKAD KTNVNPSETK SAEDSISKVD DSEFCNDHKT DRDVEESSGE DFADAEGTSS
201: NYNQEHLIVT EEVKASPTHG LSPSEIEPDE NSKDEVAISQ DNDSKECLTL GDILSREDEQ KSLNQDNISS DSHEEQSPSQ LQDKEKRSLE TTAIETELEK
301: TEEPKQGEEK LSSVSTTTSQ EPNKTCNEPE KPETENHHQQ NCLVENSYED DKFSSSRFGE TSFSAADSVS ISGHITYSGP IAYSGSLSVR SDASTTSGRS
401: FAFPILQSEW NSSPVRMAKA DKRRQKGGWR HTLLCCRFS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)