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AT1G30110.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.985
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : nudix hydrolase homolog 25
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
nudix hydrolase homolog 25 (NUDX25); CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797), NUDIX hydrolase (InterPro:IPR020476), NUDIX hydrolase, conserved site (InterPro:IPR020084), NUDIX hydrolase domain (InterPro:IPR000086); BEST Arabidopsis thaliana protein match is: nudix hydrolase homolog 26 (TAIR:AT3G10620.1); Has 5811 Blast hits to 5811 proteins in 1324 species: Archae - 37; Bacteria - 3778; Metazoa - 23; Fungi - 1; Plants - 106; Viruses - 0; Other Eukaryotes - 1866 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G30110-MONOMERBioCyc:ARA:GQT-2814-MONOMERBRENDA:3.6.1.17EC:3.6.1.17
eggNOG:COG0494eggNOG:ENOG410IJY1EMBL:AC074176EMBL:AK229734
EMBL:AY087445EMBL:BT025530EMBL:CP002684EnsemblPlants:AT1G30110
EnsemblPlants:AT1G30110.1EnsemblPlants:AT1G30110.2entrez:839890Gene3D:3.90.79.10
GeneID:839890Genevisible:Q9C6Z2GO:GO:0004081GO:GO:0006753
GO:GO:0008893GO:GO:0015967GO:GO:0046872Gramene:AT1G30110.1
Gramene:AT1G30110.2HAMAP:MF_00298hmmpanther:PTHR11839hmmpanther:PTHR11839:SF8
HOGENOM:HOG000066722InParanoid:Q9C6Z2InterPro:IPR000086InterPro:IPR015797
InterPro:IPR020084InterPro:IPR020476InterPro:IPR022927KEGG:ath:AT1G30110
ncoils:CoilOMA:KWAKPEEPaxDb:Q9C6Z2Pfam:PF00293
Pfam:Q9C6Z2Pfscan:PS51462PhylomeDB:Q9C6Z2PIR:B86425
PRIDE:Q9C6Z2PRINTS:PR00502PRO:PR:Q9C6Z2PROSITE:PS00893
PROSITE:PS51462ProteinModelPortal:Q9C6Z2Proteomes:UP000006548RefSeq:NP_001185114.1
RefSeq:NP_174303.1scanprosite:PS00893SMR:Q9C6Z2STRING:3702.AT1G30110.1
SUPFAM:SSF55811TAIR:AT1G30110tair10-symbols:ATNUDX25tair10-symbols:NUDX25
UniGene:At.43787UniProt:Q9C6Z2
Coordinates (TAIR10) chr1:+:10582700..10583821
Molecular Weight (calculated) 19830.20 Da
IEP (calculated) 4.47
GRAVY (calculated) -0.64
Length 175 amino acids
Sequence (TAIR10)
(BLAST)
001: MENLPPGYRP NVGVCLINSD NLVFVASRLN VPGAWQMPQG GIEDGEDPKS AAMRELQEET GVVSAEIVSE VPNWLTYDFP PAVKAKVNRL WGGEWHGQAQ
101: KWYLVRLRND EDEKEINLAN NEADSEFAEW KWAKPEEVVE QAVDYKRPTY EEVIKTFGSF LNDTGRAAKC KSAKW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)