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AT2G02090.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : SNF2 domain-containing protein / helicase domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ETL1; FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: chromatin remodeling 5 (TAIR:AT2G13370.1); Has 19948 Blast hits to 16374 proteins in 2059 species: Archae - 127; Bacteria - 6550; Metazoa - 3755; Fungi - 4012; Plants - 1782; Viruses - 219; Other Eukaryotes - 3503 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-970-MONOMERBioGrid:143EC:3.6.4.-eggNOG:ENOG410XNUT
eggNOG:KOG0389EMBL:AC005936EMBL:AY059857EMBL:BT002576
EMBL:CP002685EnsemblPlants:AT2G02090EnsemblPlants:AT2G02090.1entrez:814740
Gene3D:3.40.50.300GeneID:814740Genevisible:Q9ZUL5GO:GO:0003677
GO:GO:0004386GO:GO:0005524GO:GO:0005634GO:GO:0006281
GO:GO:0006351GO:GO:0006355GO:GO:0006974GO:GO:0016568
GO:GO:0031047GO:GO:0071494Gramene:AT2G02090.1hmmpanther:PTHR10799
HOGENOM:HOG000172362InParanoid:Q9ZUL5IntAct:Q9ZUL5InterPro:IPR000330
InterPro:IPR001650InterPro:IPR014001InterPro:IPR027417iPTMnet:Q9ZUL5
KEGG:ath:AT2G02090KO:K14439OMA:STRNCESPaxDb:Q9ZUL5
Pfam:PF00176Pfam:PF00271Pfam:Q9ZUL5Pfscan:PS51192
Pfscan:PS51194PhylomeDB:Q9ZUL5PIR:H84432PRIDE:Q9ZUL5
PRO:PR:Q9ZUL5PROSITE:PS51192PROSITE:PS51194ProteinModelPortal:Q9ZUL5
Proteomes:UP000006548RefSeq:NP_178318.1SMART:SM00487SMART:SM00490
SMR:Q9ZUL5STRING:3702.AT2G02090.1SUPFAM:SSF52540TAIR:AT2G02090
tair10-symbols:CHA19tair10-symbols:CHR19tair10-symbols:ETL1UniGene:At.13358
UniProt:Q9ZUL5
Coordinates (TAIR10) chr2:+:523481..526884
Molecular Weight (calculated) 86281.80 Da
IEP (calculated) 5.46
GRAVY (calculated) -0.43
Length 763 amino acids
Sequence (TAIR10)
(BLAST)
001: MKRDFDEISE EEWSQHSFNA SRVLKRPRTP KKTRAATNPT PSIESFAFRR PSTAMTIESN SSDGDCVEIE DLGDSDSDVK IVNGEDLLLE DEEEVEETKV
101: VMRAARVGRR FVIEDEEASD DDDDEAESSA SEDEFGGGGG GSGGRRGEDE DVVGKALQKC AKISADLRKE LYGTSSGVTD RYSEVETSTV RIVTQNDIDD
201: ACKAEDSDFQ PILKPYQLVG VNFLLLLYKK GIEGAILADE MGLGKTIQAI TYLTLLSRLN NDPGPHLVVC PASVLENWER ELRKWCPSFT VLQYHGAARA
301: AYSRELNSLS KAGKPPPFNV LLVCYSLFER HSEQQKDDRK VLKRWRWSCV LMDEAHALKD KNSYRWKNLM SVARNANQRL MLTGTPLQND LHELWSLLEF
401: MLPDIFTTEN VDLKKLLNAE DTELITRMKS ILGPFILRRL KSDVMQQLVP KIQRVEYVLM ERKQEDAYKE AIEEYRAASQ ARLVKLSSKS LNSLAKALPK
501: RQISNYFTQF RKIANHPLLI RRIYSDEDVI RIARKLHPIG AFGFECSLDR VIEEVKGFND FRIHQLLFQY GVNDTKGTLS DKHVMLSAKC RTLAELLPSM
601: KKSGHRVLIF SQWTSMLDIL EWTLDVIGVT YRRLDGSTQV TDRQTIVDTF NNDKSIFACL LSTRAGGQGL NLTGADTVII HDMDFNPQID RQAEDRCHRI
701: GQTKPVTIFR LVTKSTVDEN IYEIAKRKLV LDAAVLESGV HVDDNGDTPE KTMGEILASL LMG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)