AT2G03270.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.996 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : DNA-binding protein, putative | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
DNA-binding protein, putative; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, DNA binding, nucleotide binding, ATP binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935), DNA helicase, putative (InterPro:IPR004483), DEAD-like helicase, N-terminal (InterPro:IPR014001); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G35970.1); Has 6736 Blast hits to 5857 proteins in 1106 species: Archae - 209; Bacteria - 2506; Metazoa - 1275; Fungi - 1034; Plants - 659; Viruses - 7; Other Eukaryotes - 1046 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr2:+:994071..995990 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 70854.80 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.20 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.28 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 639 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MARKMSLEAF VSTMAPLIDM EKEAEISMSL TSGASRNIET AQKKGTTILN LKCVDVQTGL MGKSLIEFQS NKGDVLPAHK FGNHDVVVLK LNKSDLGSSP 101: LAQGVVYRLK DSSITVVFDE VPEEGLNTSL RLEKLANEVT YRRMKDTLIQ LSKGVLRGPA SDLVPVLFGE RQPSVSKKDV KSFTPFNKNL DQSQKDAITK 201: ALSSKDVFLL HGPPGTGKTT TVVEIVLQEV KRGSKILACA ASNIAVDNIV ERLVPHKVKL VRVGHPARLL PQVLDSALDA QVLKGDNSGL ANDIRKEMKA 301: LNGKLLKAKD KNTRRLIQKE LRTLGKEERK RQQLAVSDVI KNADVILTTL TGALTRKLDN RTFDLVIIDE GAQALEVACW IALLKGSRCI LAGDHLQLPP 401: TIQSAEAERK GLGRTLFERL ADLYGDEIKS MLTVQYRMHE LIMNWSSKEL YDNKITAHSS VASHMLFDLE NVTKSSSTEA TLLLVDTAGC DMEEKKDEEE 501: STYNEGEAEV AMAHAKRLME SGVQPSDIGI ITPYAAQVML LRILRGKEEK LKDMEISTVD GFQGREKEAI IISMVRSNSK KEVGFLKDQR RMNVAVTRSR 601: RQCCIVCDTE TVSSDAFLKR MIEYFEEHGE YLSASEYTN |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)