suba logo
AT1G80910.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
golgi 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Protein of unknown function (DUF1712)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF1712); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1712, fungi (InterPro:IPR013176); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1712) (TAIR:AT1G16020.2); Has 182 Blast hits to 182 proteins in 73 species: Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).
Protein Annotations
DNASU:844431eggNOG:ENOG410XRE1eggNOG:KOG2622EMBL:AK318688
EMBL:CP002684EnsemblPlants:AT1G80910EnsemblPlants:AT1G80910.1entrez:844431
GeneID:844431GO:GO:0016192GO:GO:0031988GO:GO:0043231
Gramene:AT1G80910.1hmmpanther:PTHR13056InterPro:IPR013176KEGG:ath:AT1G80910
ncoils:CoilOMA:TINLFTYPfam:PF08217Proteomes:UP000006548
RefSeq:NP_178206.1STRING:3702.AT1G80910.1TAIR:AT1G80910UniGene:At.21479
UniGene:At.25189UniProt:C0Z274
Coordinates (TAIR10) chr1:+:30401143..30403466
Molecular Weight (calculated) 55431.70 Da
IEP (calculated) 6.61
GRAVY (calculated) -0.14
Length 497 amino acids
Sequence (TAIR10)
(BLAST)
001: MGMASMSSGT ESLRLCVFDL RRGQHEGQEL DKILFFYPPD LTFSTQLSVI GLSEGLITFT RLFSPEAACE VIEAERHSHV FYEAEPDIWM VMIVEKNKEI
101: EAVWRIDALR RVLKEVHSLF VMFQGSIRAL LEKEPTGGLV RSHLYPFITD YLNDLFVGKK QQLPSFRDTL KERGTVQMLT LARDAALEVQ SLVGVLDSCA
201: GTVRCHSVIL FHDLLVSTTL SPDDTVDLFA FSVMRLTTNA LSSGTSSWSY LRKGSGSPQI SSRSTTVPPL GSGGTLPSGN GSSTGRVIRP LQHDKWSKGK
301: DGFLVTDIWG LDATPTILIQ KTQESFYLLT YQYKSLTLVL LVPIAAIVNG ELDISFVKQQ VIENASTKIL KVEEKLSKGW GGENAYHVSG YRYLLVDNDM
401: EVSRASPPGK VATLAKESLL ALNKLREEVD TEKNRSKQEK DMEICIRAKN NTWVIARLNR GKELYMALEK ASETLLDATD SVQRFSNRYC SGAFPMD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)