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AT5G05670.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : signal recognition particle binding
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
signal recognition particle binding; FUNCTIONS IN: signal recognition particle binding; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Signal recognition particle receptor, beta subunit (InterPro:IPR019009); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G18770.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2229eggNOG:KOG0090EMBL:AB005237EMBL:AK317015
EMBL:AK317276EMBL:BT015877EMBL:BT020189EMBL:CP002688
EnsemblPlants:AT5G05670EnsemblPlants:AT5G05670.1EnsemblPlants:AT5G05670.2entrez:830451
Gene3D:3.40.50.300GeneID:830451GO:GO:0005525GO:GO:0005783
GO:GO:0005886GO:GO:0007264GO:GO:0016021Gramene:AT5G05670.1
Gramene:AT5G05670.2hmmpanther:PTHR11485hmmpanther:PTHR11485:SF32HOGENOM:HOG000241847
IntAct:Q9FFK7InterPro:IPR019009InterPro:IPR024156InterPro:IPR027417
KEGG:ath:AT5G05670KO:K12272ncoils:CoilOMA:IDYPGND
Pfam:PF09439Pfscan:PS51417PhylomeDB:Q9FFK7PROSITE:PS51417
Proteomes:UP000006548RefSeq:NP_196186.1RefSeq:NP_974735.1SMR:Q9FFK7
STRING:3702.AT5G05670.1SUPFAM:SSF52540TAIR:AT5G05670TMHMM:TMhelix
UniGene:At.46385UniProt:Q9FFK7
Coordinates (TAIR10) chr5:-:1695916..1697534
Molecular Weight (calculated) 29077.30 Da
IEP (calculated) 7.99
GRAVY (calculated) -0.09
Length 260 amino acids
Sequence (TAIR10)
(BLAST)
001: MENLEDLKIL AEQWSHQGIE YLQKIPPNQL YAAIGVLLFT TILLFLSIRL VRRTKSNTVL LSGLTGSGKT VLFYQLRDGS SHQGTVTSME PNEGTFVLHS
101: ENTKKGKIKP VHLVDVPGHS RLRPKLEEFL PQAAAIVFVV DALEFLPNCR AASEYLYEIL TNANVVKKKI PVLLCCNKTD KLTAHTKEFI RKQMEKEIEK
201: LRASRSAVST ADIANDFTIG IEGEVFSFTH CSNKVTVAEA SGLTGETIQI EDFIREYIKP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)