AT5G05670.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:endoplasmic reticulum 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : signal recognition particle binding | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
signal recognition particle binding; FUNCTIONS IN: signal recognition particle binding; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Signal recognition particle receptor, beta subunit (InterPro:IPR019009); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G18770.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr5:-:1695916..1697534 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 29077.30 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 7.99 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.09 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 260 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MENLEDLKIL AEQWSHQGIE YLQKIPPNQL YAAIGVLLFT TILLFLSIRL VRRTKSNTVL LSGLTGSGKT VLFYQLRDGS SHQGTVTSME PNEGTFVLHS 101: ENTKKGKIKP VHLVDVPGHS RLRPKLEEFL PQAAAIVFVV DALEFLPNCR AASEYLYEIL TNANVVKKKI PVLLCCNKTD KLTAHTKEFI RKQMEKEIEK 201: LRASRSAVST ADIANDFTIG IEGEVFSFTH CSNKVTVAEA SGLTGETIQI EDFIREYIKP |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)