AT5G28220.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.776 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein prenylyltransferase superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein prenylyltransferase superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026); BEST Arabidopsis thaliana protein match is: Protein prenylyltransferase superfamily protein (TAIR:AT3G04830.1); Has 532 Blast hits to 529 proteins in 210 species: Archae - 27; Bacteria - 37; Metazoa - 228; Fungi - 111; Plants - 54; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:10190626..10193054 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 34967.40 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.44 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.18 | ||||||||||||||||||||||||||||||||
| Length | 316 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLVSSSKITR AREMVTKTEE KQLNQLEIQV DNGGGGTWEY LCLVRNLKVR RSEKVLKHGS SILNDQKKRS ALGPDEWTLN EQVAIAAMDC QCLGVAQSCI 101: KALQTKFPGS KRVGRLEALL LEAKGLWGEA EEAYASLLED NPLDQAIHKR RVAISKALGK PSIAIELLNK YLELFMADHD AWRELAELYL SLQMYKQAAF 201: CYEELILSQP TVPLYHLAYA EVLYTIGGVE NIISARKYYA ATVDLTGGKN TRALLGICLC ASAIAQLSKG RNKEDKDATA APELHSLAAA AVEKEYKQKA 301: PDKLQLISSA LRILKT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)