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AT1G65270.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Predictors External Curations
AmiGO : endoplasmic reticulum 16618929
AmiGO : plasma membrane 17151019
TAIR : plasma membrane 17151019
TAIR : endoplasmic reticulum 16618929
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31818904 (2020): mitochondrion
  • PMID:31520498 (2020): mitochondrion
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25641898 (2015): plasma membrane
  • PMID:24012629 (2013): nucleus
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:16618929 (2006): endoplasmic reticulum
  • PMID:15574830 (2004): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 149 Blast hits to 149 proteins in 49 species: Archae - 0; Bacteria - 0; Metazoa - 98; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111PENeggNOG:KOG4827EMBL:AC004512EMBL:AK316936
EMBL:AK316997EMBL:BT002430EMBL:BT006319EMBL:CP002684
EnsemblPlants:AT1G65270EnsemblPlants:AT1G65270.1EnsemblPlants:AT1G65270.2EnsemblPlants:AT1G65270.3
entrez:842834GeneID:842834GO:GO:0005774GO:GO:0005783
Gramene:AT1G65270.1Gramene:AT1G65270.2Gramene:AT1G65270.3hmmpanther:PTHR21397
hmmpanther:PTHR21397:SF4HOGENOM:HOG000243752InterPro:IPR029615KEGG:ath:AT1G65270
OMA:HMEGANIPANTHER:PTHR21397:SF4PhylomeDB:O80798PIR:T02349
Proteomes:UP000006548RefSeq:NP_564847.1RefSeq:NP_849845.1RefSeq:NP_974093.1
TAIR:AT1G65270UniGene:At.23170UniProt:O80798
Coordinates (TAIR10) chr1:+:24241855..24244504
Molecular Weight (calculated) 32536.40 Da
IEP (calculated) 6.37
GRAVY (calculated) -0.40
Length 292 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKLTLLFFL SFLIFSSSIA FQSDELLVDD DEFGLEGAKP RSTDLYTSSS SSPQQQQQTP TIRRRYSDPT DLDSKVQFTL EHAFGDSDFS PAGTFSARLK
101: TWSHGGKTLT KLRFSRNDFS AEEKDAFKNL LKGDDFYRIR LPSNVVSPPG REFVIASVRA RCLPRDGLDE HFIIHMEGAN ILAVSYGSPG ACQYPRQLKL
201: PAKWSFNSHT ILKSSEQAPR TPIFTEEILG SENVEGEVEP PPERSFWAKY WMYLIPLGLV VMNAVTQASN MAEEPAGGQA GGAQVQPAAR RR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)