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AT1G80170.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Pectin lyase-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: plant-type cell wall; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G70500.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G80170-MONOMERBioGrid:29575CAZy:GH28EC:3.2.1.15
eggNOG:COG5434eggNOG:ENOG410IJY9EMBL:AC009322EMBL:AY046002
EMBL:AY142668EMBL:CP002684EnsemblPlants:AT1G80170EnsemblPlants:AT1G80170.1
entrez:844357Gene3D:2.160.20.10GeneID:844357Genevisible:Q94AJ5
GO:GO:0004650GO:GO:0005576GO:GO:0005975GO:GO:0009505
GO:GO:0071555Gramene:AT1G80170.1gramene_pathway:3.2.1.15gramene_pathway:PWY-1081
hmmpanther:PTHR31375hmmpanther:PTHR31375:SF4HOGENOM:HOG000237792InParanoid:Q94AJ5
IntAct:Q94AJ5InterPro:IPR000743InterPro:IPR006626InterPro:IPR011050
InterPro:IPR012334iPTMnet:Q94AJ5KEGG:ath:AT1G80170OMA:KNMRVEN
PaxDb:Q94AJ5Pfam:PF00295Pfam:Q94AJ5PhylomeDB:Q94AJ5
PIR:D96833PRIDE:Q94AJ5PRO:PR:Q94AJ5PROSITE:PS00502
ProteinModelPortal:Q94AJ5Proteomes:UP000006548RefSeq:NP_565232.1scanprosite:PS00502
SMART:SM00710SMR:Q94AJ5SUPFAM:SSF51126TAIR:AT1G80170
TMHMM:TMhelixUniGene:At.11620UniProt:Q94AJ5
Coordinates (TAIR10) chr1:-:30153646..30155683
Molecular Weight (calculated) 48174.30 Da
IEP (calculated) 8.38
GRAVY (calculated) -0.18
Length 444 amino acids
Sequence (TAIR10)
(BLAST)
001: MSYSRGGTLV TLLLLLVVAS SLALTANANS FESLLQLPRR QSRSTRPRSE RLLHVGNFGA KGNGVTDDTK AFADAWKTAC SSKVKTRILV PENYTCLLRP
101: IDLSGPCKAR LTLQISGTII APNDPDVWEG LNRRKWLYFH GLSRLTVEGG GTVNGMGQEW WERSCKHNHS NPCRGAPTAL TFHKCKNMRV ENLNVIDSQQ
201: MHIALTSCRR VTISGLKVIA PATSPNTDGI HISVSRGIVI DNTTVSTGDD CISIVKNSTQ ISISNIICGP GHGISIGSLG KSKSWEEVRD ITVDTAIISD
301: TANGVRIKTW QGGSGLVSKI IFRNIKMNNV SNPIIIDQYY CDSRKPCANQ TSAISIENIS FVHVRGTSAS KEAIKISCSD SSPCRNILLQ DIDLEPSNGD
401: GFTESFCWEA YGSSSGQVYP PPCLSDDTSF LEQSVQSGIT SAYL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)