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AT4G24530.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.848
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : O-fucosyltransferase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
O-fucosyltransferase family protein; CONTAINS InterPro DOMAIN/s: GDP-fucose protein O-fucosyltransferase (InterPro:IPR019378); BEST Arabidopsis thaliana protein match is: O-fucosyltransferase family protein (TAIR:AT5G65470.1); Has 832 Blast hits to 825 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 832; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKX3eggNOG:ENOG4111FD0EMBL:AK227813EMBL:BT008775
EMBL:CP002687EnsemblPlants:AT4G24530EnsemblPlants:AT4G24530.1entrez:828555
GeneID:828555GO:GO:0016757Gramene:AT4G24530.1hmmpanther:PTHR31933
hmmpanther:PTHR31933:SF5HOGENOM:HOG000240134InterPro:IPR019378InterPro:IPR024709
KEGG:00514+2.4.1.221KEGG:ath:AT4G24530OMA:HASAEWYPfam:PF10250
PhylomeDB:Q7Y030PIRSF:PIRSF009360Proteomes:UP000006548RefSeq:NP_194184.2
STRING:3702.AT4G24530.1TAIR:AT4G24530UniGene:At.32337unipathway:UPA00378
UniProt:Q7Y030
Coordinates (TAIR10) chr4:-:12667424..12669713
Molecular Weight (calculated) 58164.20 Da
IEP (calculated) 9.45
GRAVY (calculated) -0.20
Length 519 amino acids
Sequence (TAIR10)
(BLAST)
001: MLQMKQPLQN LNQSQKTALA GVFVLLFPIL YPNLFSPLGR ASPSLFSEWN APRPRHLSLL QGALDRQISI RQQVELWSPL ADQGWKPCTE SYRGASLPEK
101: SEGFLQVFLD GGLNQQRMGI CDAVAVAKIM NVTLVIPRLE VNTVWQDSSS FTDIFDLDHF ISVLKDEVRI VRELPIQYAW STRDYYATGI RATRIKTAPV
201: HASAEWYLEN VLPIIQSYGI AAVAPFSHRL AFDNLPESIQ RLRCKVNFEA LNFVPHIREL GDALVHRLRN PPSSSQTSGT MDPTDRINTI VKAGAGKFAV
301: LHLRFDKDMA AHSGCDFEGG KAEKLALAKY RQVIWQGRVL NSQFTDEELR NKGRCPLTPE EIGLLLSALG FSNNTRLYLA SHQVYGGEAR ISTLRKLFPG
401: IENKKSLASA EELADVQGKA SLMAAVDYYV SMKSDIFISA SPGNMHNALQ AHRAYLNLKT IRPNMILLGQ VFVNKSLDWS EFEGAVMNGH KNRQGQLRLR
501: KQKQSIYTYP APDCMCKVA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)