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AT1G79970.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.994
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF581) (TAIR:AT2G25690.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JQGKeggNOG:ENOG4111CRZEMBL:AC011717EMBL:AY045688
EMBL:AY054148EMBL:CP002684EnsemblPlants:AT1G79970EnsemblPlants:AT1G79970.1
entrez:844337ExpressionAtlas:Q9CA98GeneID:844337Gramene:AT1G79970.1
hmmpanther:PTHR33059hmmpanther:PTHR33059:SF6KEGG:ath:AT1G79970OMA:CILDCDP
PhylomeDB:Q9CA98Proteomes:UP000006548RefSeq:NP_565224.1TAIR:AT1G79970
UniGene:At.22309UniProt:Q9CA98
Coordinates (TAIR10) chr1:+:30082773..30083592
Molecular Weight (calculated) 26167.10 Da
IEP (calculated) 4.30
GRAVY (calculated) -0.59
Length 240 amino acids
Sequence (TAIR10)
(BLAST)
001: MGEASDSDSS DESLKHNSTP PLFSISGFFC VAKGGDSDPG RSPTSPLDFG VFGGLFSPRS SSSSPLHRNK WLSHKVGLSL LSSSFELGDD PFRRDYIVLA
101: PQVKVNNVNT ATPKLSSDPC VIVEEPRRSS SSSPMDIIST YSRSLSGREM ALSEDYTCII SHGPNPKTTY IFGDCILDCD PKDLGKEDIE IHEEGDDSFS
201: TEKPQNHREV SAEKESENAG AEESCYEEED LFPMAMPLNP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)