AT1G79030.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.914 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Chaperone DnaJ-domain superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Chaperone DnaJ-domain superfamily protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: Chaperone DnaJ-domain superfamily protein (TAIR:AT1G16680.1); Has 17828 Blast hits to 17824 proteins in 3062 species: Archae - 123; Bacteria - 7609; Metazoa - 2994; Fungi - 1488; Plants - 1684; Viruses - 8; Other Eukaryotes - 3922 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:29730922..29733570 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 63815.20 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.28 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.24 | ||||||||||||||||||||||||||||||||||||||||
| Length | 561 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEDIGLVKQG WKWMQSQKHM CSDACSAMRC FGEMIGGLVE RHWPLVCSGC GKLLGLLQLS VLYWKDCIFR GFHCSAKLGS AALLLIMWSC FLSLTSLSCL 101: LYVLLSMGAA AAVVLNLGCT PGLFIVGLFG ILILWMYANF WITGTLFIVG GYLFSLNHAR VVVLVAGLYA MYCVKVRLGW LGLFLSINLA FLSNDILNCL 201: LQWCDNLSEK PQHEEPKKPK ETIIEEDYSR EFEYPSVPVE DETETKIHEN KSSAKPTAPS TVVNTVKEIS SVKIVKIEES SSADEMKRIL NSLNHYEALG 301: VPRHKKIDAA VLKKEYRKKA MLVHPDKNMG SPLASESFKK LQSAYEVLSD FVKKRDYDEQ LRKEESRTRS VCQTSHASSH QSGPDYRSDE SRRIHCTKCG 401: NSHIWICTNR TKAKARWCQD CGQYHQAKDG DGWVELKGTL PFERAHKIEI PRAFVCAESK IFDVSEWAIC QGMACRPNTH RPSFHVNMVG LEKTTQRSNS 501: SRFPWDLDVE MMDEDEEEFE LWLQQALASG LFCETSKRRK SWSPFKLGQM KSKKQWRRTS T |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)