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AT5G59020.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF3527)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF3527); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3527 (InterPro:IPR021916); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3527) (TAIR:AT2G29510.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IV8CeggNOG:ENOG410ZKFPEMBL:AB024027EMBL:AK175788
EMBL:CP002688EnsemblPlants:AT5G59020EnsemblPlants:AT5G59020.1entrez:836019
GeneID:836019Gramene:AT5G59020.1hmmpanther:PTHR31390hmmpanther:PTHR31390:SF4
HOGENOM:HOG000090355InterPro:IPR021916KEGG:ath:AT5G59020OMA:AVNKETD
Pfam:PF12043PhylomeDB:Q9FGU9Proteomes:UP000006548RefSeq:NP_200710.1
TAIR:AT5G59020UniGene:At.43448UniProt:Q9FGU9
Coordinates (TAIR10) chr5:-:23827160..23829603
Molecular Weight (calculated) 86366.40 Da
IEP (calculated) 9.95
GRAVY (calculated) -0.73
Length 780 amino acids
Sequence (TAIR10)
(BLAST)
001: METPVKQRLE SHELVKYMSK LPVFLERAET TPQEKLLSVG VLDWGRLEKW QHSHNRVSMK SRFPMVSQAD ALLAPPPRGE SSSAGPSKVQ NRSSDRRLKH
101: RSSRQSSVMP NSVVKECEEI KCTRRKKHKD RRCFSVPEEQ FGPSTNAQGL DVCEEKDLKG KICSKNGTLS HGLNPEAGLN MEVKSKADVS RHRKSEKNLH
201: ERNRNEHDGE LGRKQHGEAK TCKRSSNRKV RVVHGVEGDY CTQHSCPLPC NADGCLAESK LGSTDADQKK VSVELSQCVS LLTKARNKSS KGKISEDRAS
301: SLLSVKHCMY EPCQRQDSKT HKVTSEKGRS ISPFQRLSFN MGKASKTNSE GGTVPTTQLD SMTNSTKIDS QNVALLSDVD GSNCNKPSKK DTTTTSHLRR
401: LLEPLLKPRA ANSGNSVEGP KGQGLQRLKL GITGCKSVNV NDSAHGKKLG SSMVRAVLRV TVKNNQPLFT FAVNKETDII AATQKKMGSS EEGECTSVYT
501: FFSIKDHKRN SGWLNQRGSG QTHGLISNVV AQMRVSSSLP SGSIREFVLF SVELDRESTE KSDLQLKNEL AAIIVKMPRL FHRRAPLNTV QDHNATSGEL
601: EDHIKDKFFD QDISATVILQ SGVHSMPQKG GPSSLIQRWR TGGSCDCGGW DMGCNLRILT NQHNLSYKKS ATSNSPPSSN RFELFFLGEQ AEEHPFLSFK
701: PIKEGIYSVA YNSSLSQLQA FSICMALAES RKMSENILEQ KSSCDEHKVR GKTVLLPDQD SNPNGNTVGY QPRFSPVGRV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)