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AT1G76870.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors (TAIR:AT1G21200.1); Has 406 Blast hits to 351 proteins in 76 species: Archae - 0; Bacteria - 2; Metazoa - 137; Fungi - 14; Plants - 127; Viruses - 0; Other Eukaryotes - 126 (source: NCBI BLink).
Protein Annotations
DNASU:844022EMBL:AB493539EMBL:AC079283EMBL:CP002684
EnsemblPlants:AT1G76870EnsemblPlants:AT1G76870.1entrez:844022GeneID:844022
Gramene:AT1G76870.1hmmpanther:PTHR21654hmmpanther:PTHR21654:SF11HOGENOM:HOG000239147
KEGG:ath:AT1G76870ncoils:CoilOMA:VRRNIAIPfam:PF13837
PhylomeDB:Q9C6K4PIR:E96797Proteomes:UP000006548RefSeq:NP_177813.1
SMR:Q9C6K4TAIR:AT1G76870UniGene:At.52539UniProt:Q9C6K4
Coordinates (TAIR10) chr1:+:28857250..28858407
Molecular Weight (calculated) 44959.80 Da
IEP (calculated) 7.07
GRAVY (calculated) -1.22
Length 385 amino acids
Sequence (TAIR10)
(BLAST)
001: MEGNCSQGRF DSQVSSMRDL RPNAINQNQK QHHPNSRQDS GFNNTMDTRH NNVDRGKKSM SEDDELCLLS SDGQNKSKEN SPWQRVKWMD KMVKLMITAL
101: SYIGEDSGSD KKFAVLQKKG KWRSVSKVMD ERGYHVSPQQ CEDKFNDLNK RYKKLNEMLG RGTSCEVVEN PSLLDKIDYL NEKEKDEVRR IMSSKHLFYE
201: EMCSYHNGNR LHLPHDPAVQ RSLHLITLGS RDDHDNDEHG KHQNEDLDDD DDYEEDHDGA LSDRPLKRLR QSQSHEDVGH PNKGYDVPCL PRSQADVNRG
301: ISLDSRKAAG LQRQQIESKS LELEGRKLQI QAEMMELERQ QFKWEVFSKR REQKLAKMRM ENERMKLENE RMSLELKRIE LGAKL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)