AT1G76870.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors (TAIR:AT1G21200.1); Has 406 Blast hits to 351 proteins in 76 species: Archae - 0; Bacteria - 2; Metazoa - 137; Fungi - 14; Plants - 127; Viruses - 0; Other Eukaryotes - 126 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:28857250..28858407 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 44959.80 Da | ||||||||||||||||||||||||
| IEP (calculated) | 7.07 | ||||||||||||||||||||||||
| GRAVY (calculated) | -1.22 | ||||||||||||||||||||||||
| Length | 385 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEGNCSQGRF DSQVSSMRDL RPNAINQNQK QHHPNSRQDS GFNNTMDTRH NNVDRGKKSM SEDDELCLLS SDGQNKSKEN SPWQRVKWMD KMVKLMITAL 101: SYIGEDSGSD KKFAVLQKKG KWRSVSKVMD ERGYHVSPQQ CEDKFNDLNK RYKKLNEMLG RGTSCEVVEN PSLLDKIDYL NEKEKDEVRR IMSSKHLFYE 201: EMCSYHNGNR LHLPHDPAVQ RSLHLITLGS RDDHDNDEHG KHQNEDLDDD DDYEEDHDGA LSDRPLKRLR QSQSHEDVGH PNKGYDVPCL PRSQADVNRG 301: ISLDSRKAAG LQRQQIESKS LELEGRKLQI QAEMMELERQ QFKWEVFSKR REQKLAKMRM ENERMKLENE RMSLELKRIE LGAKL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)