AT5G13920.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.993 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : GRF zinc finger / Zinc knuckle protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
GRF zinc finger / Zinc knuckle protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878), Zinc finger, GRF-type (InterPro:IPR010666); BEST Arabidopsis thaliana protein match is: GRF zinc finger / Zinc knuckle protein (TAIR:AT1G54930.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:4485931..4487433 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 46315.70 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.60 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.45 | ||||||||||||||||||||||||||||||||
| Length | 415 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLNGTMQTGD CFRCRQAGHW INDCPLKSYT DDPPPAIQCP CGGGFCEIKV ANTRENPGRK FYKCPTAQNC CFFKWCDKVT DEDIKFRPAF TIPICSCGAG 101: PCRRVKDVSG RAYLICCIKK GFGACGFFKW EDVEMIPSCD VMDEIDFWVE ADQILSDVES SLQARGGVIP EIANQMASEK ECQASVSGIE DDCVVECQDS 201: VSAEDDSTLE NLDSISMSVS DVHSTALNQG ISLFDPVTSE PEEPWKKTQN GDQPTNSALS KLSVDEAMSD LIRDTVSSGS VVIHGRTNHE QPEIDGAEWS 301: FPCLQNLIDQ YNSEKLQLES ISGKHVQMLS EFMASYRRLR LLHEKTSHLR KTLLETEKEM VCCEAETLKF GASCREVAGE MAESQKRMQE TADKLGKEVE 401: VFKQNEFVGL KRRRT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)