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AT2G26070.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
ASURE: golgi
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Protein of unknown function (DUF778)
Curator
Summary (TAIR10)
Encodes a predicted membrane protein. Similar sequences are widely distributed and conserved in plants, animals and protists but absent in fungi and prokaryotes. The sequence has no known motifs and no biological function has been assigned in any species. In Arabidopsis, it appears to be involved in the negative regulation of the response to ethylene, is localized to the Golgi and is a positive regulator of ETR1.
Computational
Description (TAIR10)
REVERSION-TO-ETHYLENE SENSITIVITY1 (RTE1); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF778 (InterPro:IPR008496); BEST Arabidopsis thaliana protein match is: RTE1-homolog (TAIR:AT3G51040.3); Has 292 Blast hits to 292 proteins in 110 species: Archae - 0; Bacteria - 0; Metazoa - 126; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).
Protein Annotations
BioGrid:2500eggNOG:ENOG4111G1SeggNOG:KOG3150EMBL:AC004747
EMBL:AK117225EMBL:BT003729EMBL:CP002685EnsemblPlants:AT2G26070
EnsemblPlants:AT2G26070.1entrez:817148GeneID:817148Genevisible:F4ITL6
GO:GO:0000139GO:GO:0005783GO:GO:0005789GO:GO:0005794
GO:GO:0009723GO:GO:0010105GO:GO:0016021Gramene:AT2G26070.1
hmmpanther:PTHR20921HOGENOM:HOG000231333InParanoid:F4ITL6IntAct:F4ITL6
InterPro:IPR008496KEGG:ath:AT2G26070OMA:GKWINGSPANTHER:PTHR20921
PaxDb:F4ITL6Pfam:F4ITL6Pfam:PF05608PIR:T02616
PRIDE:F4ITL6PRO:PR:F4ITL6ProteinModelPortal:F4ITL6Proteomes:UP000006548
RefSeq:NP_180177.2STRING:3702.AT2G26070.1TAIR:AT2G26070tair10-symbols:RTE1
TMHMM:TMhelixUniGene:At.28087UniProt:F4ITL6
Coordinates (TAIR10) chr2:-:11105741..11106607
Molecular Weight (calculated) 27933.10 Da
IEP (calculated) 7.81
GRAVY (calculated) 0.29
Length 250 amino acids
Sequence (TAIR10)
(BLAST)
001: MSRGRGVPMM DLKRSYDVED RVVSVSIPSI IEADEADLWP LPEIDTKKSK FPCCIVWTPL PVVSWLAPFI GHIGLCREDG VILDFAGSNF INVDDFAFGP
101: PARYLQLDRT KCCLPPNMGG HTCKYGFKHT DFGTARTWDN ALSSSTRSFE HKTYNIFTCN CHSFVANCLN RLCYGGSMEW NMVNVAILLM IKGKWINGSS
201: VVRSFLPCAV VTSLGVVLVG WPFLIGLSSF SLLLFAWFII ATYCFKNIIT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)