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AT1G70160.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plasma membrane 0.840
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27020.1); Has 108 Blast hits to 108 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410II79eggNOG:ENOG410YV8NEMBL:AF360200EMBL:AY051014
EMBL:CP002684EnsemblPlants:AT1G70160EnsemblPlants:AT1G70160.1entrez:843352
GeneID:843352Gramene:AT1G70160.1hmmpanther:PTHR31354hmmpanther:PTHR31354:SF2
HOGENOM:HOG000238354KEGG:ath:AT1G70160OMA:AFAGHTSPhylomeDB:Q9C5K0
Proteomes:UP000006548RefSeq:NP_564985.1STRING:3702.AT1G70160.1TAIR:AT1G70160
UniGene:At.10302UniProt:Q9C5K0
Coordinates (TAIR10) chr1:+:26420159..26422345
Molecular Weight (calculated) 59138.40 Da
IEP (calculated) 4.73
GRAVY (calculated) -0.19
Length 523 amino acids
Sequence (TAIR10)
(BLAST)
001: MSQNPSLFFL LCLGLGFCVD LGQSLKVPFS VNDVLPMLPR QVSWPVLNSF HNAVDLLPVF IGSVTPNNVS IEWKGACFNG NEARLDITGS DRDVPGLGGG
101: VLHLKTSKAH SLTCMDLYVF ATPYRITWDY YFSARDHTLN FDSWEEKAEL EYVKEHGVSV FLMPSGMLGT LLSLIDVLPL FSNTAWGQNA NLAFLTKHMG
201: ATFEKRSQPW RSMINPEDVH SGDFLAVSKI RGRWGGFETL EKWVTGAFAG HTAVCLKDDL GNLWVGESGH ENEKGEEIIV VIPWDEWWEL TLKDNSNPQV
301: ALLPLHPDIR AKFNNTAAWE YARSMLGKPY GYHNMIFSWI DTLGDNYPPP LDAHLVISVM SMWTRVQPAY AANMWNEALN KRLGTEDLDL YGILEETARR
401: GMSFDELLTI PEQDEWVYSD GKSTTCVAFI LAMYKAAGIF DPLADHIQVT EFTIRDAYTL KLFESNQTRL PSWCNTEEGK LDFCQILGEY RMELPGYNTI
501: YPYPNMNQNC PSLPPNYERP SKC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)